Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9j06
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82287-3|CAB05313.3|  772|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z82287-3|CAB05313.3|  772|Caenorhabditis elegans Hypothetical
           protein ZK550.3 protein.
          Length = 772

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 422 TVWEQWIS--GADYTCPHFSMTIEECKRNKNG 511
           T WE+W S  G D+   + S+ IEE + N  G
Sbjct: 310 TAWEKWTSKAGFDHDFYNNSINIEELRHNNEG 341


>Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical
           protein F53B6.6 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = -3

Query: 521 KIQFHFYFFYILLLSWKSVDRCSPPRLSIVPTLYSRNVLENFSL 390
           K+Q H +  Y++ L ++SV   +PP L ++  +Y+R  L++ ++
Sbjct: 21  KVQLHSFKQYVVALRFESVQFKNPPILLLL--IYNRIFLQSITI 62


>AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical
           protein Y67D8C.2 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/61 (19%), Positives = 29/61 (47%)
 Frame = -3

Query: 488 LLLSWKSVDRCSPPRLSIVPTLYSRNVLENFSLKDITIVRTRMFA*GLSAAEEADQDEYQ 309
           L L W +V      ++ +     + + ++  +LKD+ ++  +     +S  EE  Q+ Y+
Sbjct: 81  LTLQWTTVSNVEEQKVMVTDENSTMSEVDTKTLKDLDVIMKKFNLNSISEVEERIQESYR 140

Query: 308 T 306
           +
Sbjct: 141 S 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,607,664
Number of Sequences: 27780
Number of extensions: 304799
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)