Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9j02
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   2.0  
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    26   3.6  
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    26   4.7  
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    26   4.7  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   4.7  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   6.2  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    25   6.2  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   6.2  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   8.3  

>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 23.8 bits (49), Expect(2) = 2.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 352 AICLYYVYYRNIPSCTKH 405
           A+CL  +++RN  +C K+
Sbjct: 75  AVCLMNIFFRNSENCFKY 92



 Score = 21.8 bits (44), Expect(2) = 2.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 163 LPTVVVIFLLICVYVYIKTRPSTMHD 240
           L  + ++FLL+  Y++     + MHD
Sbjct: 27  LSLIGIVFLLVLSYLFSIEAETLMHD 52


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 330 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 211
           H   +SQ  KP  E   NVY   ++KL   +  R  SRFN
Sbjct: 8   HHVKKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44


>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 330 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 211
           H   +SQ  KP  E   NVY   ++KL   +  R  SRFN
Sbjct: 8   HHVRKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 434 IEIKTKKNMFFFIRNLSVIYSTL 502
           ++IKTKKN FFFI   S++++ +
Sbjct: 67  MDIKTKKN-FFFIDGFSMLFAPI 88


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 130 AKMRKQIHTIVLPTVVVIFLLICVYVYIKTRP 225
           +K+ K +  +      + FLLIC++ YI++ P
Sbjct: 476 SKIVKPVSVVKRVAFNIPFLLICIFFYIQSSP 507


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 106 KRERKQEFAKMRKQIHTIVLPTVVVIFLLIC 198
           KRE  ++F+K+ K+I  I   T V   +++C
Sbjct: 639 KREFHKDFSKLYKEILDIFNSTTVNFLMILC 669


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 79  GPVKETARQKRERKQEFAKMRKQIHTIVLPTVVVIFLLICVY 204
           GP  ETA    ER+QEF  +   I++++   + V+ + +  +
Sbjct: 62  GPT-ETANPNVERRQEFKDLHPNIYSLLRLLIAVLAVSVVFF 102


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -1

Query: 320 PNHNLKNHPQNKSRMYILFT**SYCYASCIVDGRVLMYTYTQINKNITTTVGNTIV 153
           P+ NL N   +  R  I          SCI+  R L+  YT++     + V NTI+
Sbjct: 297 PDSNLLNQTFSYQRHQIYKEEDVVLARSCIIKARTLIGAYTKVGD--ASVVANTII 350


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 414 HLDMLGTTWNVSVINIV*TYSTKSLTCYHIESQSQ 310
           H D++   W  S+     T  TK LTC +I S+ +
Sbjct: 221 HSDVMHPKWVHSLFEGTLTSETKCLTCENITSRDE 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,031
Number of Sequences: 5004
Number of extensions: 43507
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)