Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9i20
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    27   2.5  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      26   3.4  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   7.7  

>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 426 PIVGDTISLSSQGNVYTHG*SMYSSNY 506
           P VGD  S+SS+G+  +   S +SSNY
Sbjct: 45  PAVGDDESVSSRGSSRSQTPSEFSSNY 71


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 212 PSKSTFHLIEEKKPLNGNFILEEFSQGNITQNTWYFL 322
           P  STF   E    L   F+L+E+ + N   + +Y L
Sbjct: 337 PKSSTFIFQENVVSLISGFLLKEYEKSNFLDSKFYVL 373


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 266 FILEEFSQGNITQNTWYFLKMNSLIKK 346
           +I E F+  N+ +  ++  K NSL+KK
Sbjct: 677 YIRESFASSNVEKQEFWQEKSNSLLKK 703


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,261
Number of Sequences: 5004
Number of extensions: 53415
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)