Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9i20
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941...    28   6.0  
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365...    27   7.9  

>05_03_0187 +
           9413575-9414895,9415014-9415289,9415513-9415631,
           9415749-9416192
          Length = 719

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
 Frame = +2

Query: 128 LSSIIDGK*PTSSYFTGLEGLAA*V-FQCPSKSTFH--LIEEKKPLNGNFILEE---FSQ 289
           L S++D K    +YF  L  +   +    PS   FH  ++E KK ++  F  ++      
Sbjct: 430 LKSLLDNKKRVINYFEPLANVLRRMDSDVPSMGFFHGLMLEAKKEISQRFDNDKSRFIEV 489

Query: 290 GNITQNTWYFLKMNSLIKKCYAISRTRPYYYYTDVIKIEESCYTRTNCWRYN 445
            NI    W       L    Y ++   PYYY+ +  +IE     R   W  N
Sbjct: 490 WNIIDKRWDNKLKTPLHLAGYYLN---PYYYFPNKQEIESDGSFRAAKWWLN 538


>11_04_0272 -
           15631598-15631898,15633162-15633291,15636394-15636544,
           15636632-15636730,15636912-15637063,15637079-15637301
          Length = 351

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 235 YRRKKTLKWQFYT*RIFTRKYYPKYMVFSKNEFLNKKMLRH 357
           Y  + ++ W+ +    F +KY+P+ +   K EFL  K + +
Sbjct: 38  YSERISITWELFK-EAFYKKYFPESVKRMKKEFLELKQVEY 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,123,496
Number of Sequences: 37544
Number of extensions: 283952
Number of successful extensions: 586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)