Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9i20
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   0.93 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.6  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   8.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +1

Query: 250 TLKWQFYT*RIFTRKYYPKYMVFSKNEFLNKKMLRHFSYKTLLLLHGCH*N*RVLLHENQ 429
           T  W+F    +  R+Y P+Y+ ++  E   + + +    K +  L G H N   + +E  
Sbjct: 458 TYLWEFLLKLLQDREYCPRYIKWTNRE---RGVFKLVDSKAVSRLWGLHKNKPDMNYETM 514

Query: 430 LLAIQY 447
             A++Y
Sbjct: 515 GRALRY 520


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 343 KMLRHFSYKTLLLLHGCH*N*RVLL 417
           ++L+HF+Y  ++ +H    + R LL
Sbjct: 160 ELLKHFNYMKVIFIHSSDTDGRALL 184


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 49  NAMSVMCINTKCINTKKTFFLANI 120
           N  S MC + K  N K   FLA I
Sbjct: 539 NQNSEMCFSLKFKNKKLPVFLAEI 562


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 339 IKEFIFRKYHVFWVIFPCEN 280
           +KE I +K    WVI PC +
Sbjct: 67  MKERIRQKAAGHWVIHPCSS 86


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 339 IKEFIFRKYHVFWVIFPCEN 280
           +KE I +K    WVI PC +
Sbjct: 67  MKERIRQKAAGHWVIHPCSS 86


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 339 IKEFIFRKYHVFWVIFPCEN 280
           +KE I +K    WVI PC +
Sbjct: 67  MKERIRQKAAGHWVIHPCSS 86


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 372 GLVREMA*HFFIKE 331
           G +RE+A HF+ KE
Sbjct: 146 GQIREVARHFYHKE 159


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 421 RVTRLFNFNDIRVVVIRSCTRNGV 350
           +VTRL+ F+D  ++V  S  ++ V
Sbjct: 103 KVTRLYEFSDNELLVHISTNKSDV 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,302
Number of Sequences: 438
Number of extensions: 3817
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)