Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9i19
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   9.6  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 255 PTKRRGPIAAEASSPGPAVVSLPSLIGKPPPE 350
           P + R   A E   PGP++       G P PE
Sbjct: 393 PPQIRQAFAEETLQPGPSMFLKCVASGNPTPE 424


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 573 PVRPYSVRSHKARVS 529
           P  PY V  HKA ++
Sbjct: 259 PTSPYHVSDHKAAIT 273


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 297 PGPAVVSLPSLIGKPPPE 350
           PGPAV    S  G P P+
Sbjct: 435 PGPAVSLKCSAAGNPTPQ 452


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 297 PGPAVVSLPSLIGKPPPE 350
           PGPAV    S  G P P+
Sbjct: 435 PGPAVSLKCSAAGNPTPQ 452


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +2

Query: 287 SFQSWTSRSISPFPYR*TASRIEETKSSSFYFR 385
           +F  +   +I+PF Y   ++  ++ +S S  F+
Sbjct: 221 TFDDYLDYAINPFDYEKRSTDFQDVESGSESFK 253


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +2

Query: 287 SFQSWTSRSISPFPYR*TASRIEETKSSSFYFR 385
           +F  +   +I+PF Y   ++  ++ +S S  F+
Sbjct: 221 TFDDYLDYAINPFDYEKRSTDFQDVESGSESFK 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,561
Number of Sequences: 438
Number of extensions: 4221
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)