Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9i17
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   3.4  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    24   7.9  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = -1

Query: 345 PHHQGIHVLRLYSDSPSYVGHIVMSDLVGNFISVNFVSRCARIV 214
           P H  I +  L SDS  Y  H+ +++ +   ++ +  +R ++ +
Sbjct: 218 PMHSSISISTLLSDSDRYEPHVSLTENISPVMAPSIDARLSQTI 261


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 288 GHIVMSDL-VGNFISVNFVSRCARIVK-FHSHQFFIASLQK 172
           GHI   D   G  ++   +    R VK FH+HQ+F  + +K
Sbjct: 123 GHISAFDWRTGKLLTELHLRETVRDVKWFHNHQYFAVAQKK 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,117,591
Number of Sequences: 5004
Number of extensions: 16762
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)