Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9i17
         (351 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0749 - 22758317-22760407                                         27   5.5  
03_03_0222 - 15559996-15560188,15561120-15561150,15561645-155617...    27   5.5  

>12_02_0749 - 22758317-22760407
          Length = 696

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 312 YSDSPSYVGHIVMSDLVGNFISVNFVSRC 226
           +S +  Y+GH+V+  L+ + +S N V  C
Sbjct: 414 FSKANHYLGHMVLKGLLSSVMSYNMVIDC 442


>03_03_0222 -
           15559996-15560188,15561120-15561150,15561645-15561701,
           15563059-15563134,15563220-15563347,15563459-15563660,
           15563781-15563879,15564032-15564124,15564539-15564877
          Length = 405

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 318 RLYSDSP-SYVGHIVMSDLVGNFISVNFVSRCARIV 214
           R+ + +P +Y+GH +     GN I+   +SRC  I+
Sbjct: 204 RMQAVTPFTYIGHFLDKINEGNRITSELISRCTEII 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,391,408
Number of Sequences: 37544
Number of extensions: 86204
Number of successful extensions: 124
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)