Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9i14
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 29 0.43
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 29 0.57
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.3
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.1
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 26 5.3
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom... 26 5.3
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 7.1
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 9.3
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 25 9.3
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 29.5 bits (63), Expect = 0.43
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = -1
Query: 329 LHLKCLLIYPQMPNRVPNLSKNILIEDYFQEFRFELEPTKITNKNLLISKYSNIYIARNV 150
+HLKCL +Y V ++ + L D+ + +++ KN+L+SKY+ Y+A+N
Sbjct: 300 IHLKCLCVY------VESILRYGLPPDFSSVIFQPMAKSEVKIKNILLSKYA--YLAQNP 351
Query: 149 I 147
+
Sbjct: 352 V 352
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 29.1 bits (62), Expect = 0.57
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +2
Query: 422 TCLKHWYIISSIMFVLIYWGWKPLIIILMQPVIFSTIIFLGGKKTSIWLTSIVLLMSYNS 601
+C K W S ++ V L+ + V+ I LG KKT + + I+++ S
Sbjct: 168 SCKKKWVRASILLSVACSVKMSSLLYVPAYLVLLLQI--LGPKKTWMHIFVIIIVQILFS 225
Query: 602 LKYKYYFWNF 631
+ + YFW++
Sbjct: 226 IPFLAYFWSY 235
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = +2
Query: 272 RDLAHGWAFVDRLRDISDVE---WSTWK 346
R + GW+ VD +RD+ + WS WK
Sbjct: 271 RMIESGWSSVDEIRDVHNKRLDAWSEWK 298
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = -3
Query: 543 PKNIIVENITGCIKIIIKGFQPQYIKTNIMLDIMYQCFRHVNLVFLI 403
P+NI +++I +K++I+ ++ + L I+Y C + VF++
Sbjct: 481 PRNICIDSIED-VKVLIRAYRENLGLHHTPLIIVYACIVSCSTVFML 526
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +2
Query: 158 EQYIYLSIWILANFYSLFSLVQAQNEILENNPQLGYSLRDLAHGWAFVDRLRDISDVEWS 337
E + LS + FY LF N L+ NP G + L + + F+ R+ ++
Sbjct: 460 EYFFLLSHEMFNPFYCLFEYSSVDNYTLQINPHSGINPEHLNY-FKFIGRVIGLAIFHRR 518
Query: 338 TWKHFIQTSWVYLILQ 385
F S+ +ILQ
Sbjct: 519 FVDAFFVVSFYKMILQ 534
>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 501 F*CSQLYFQLLYFWEEKKPVYGLPVL 578
F S F +LY W K P+Y + +L
Sbjct: 95 FAASYFSFTMLYIWSWKHPLYRISIL 120
>SPAC1527.02 |sft2||Golgi transport protein Sft2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 102 NLKLYSQLLIYFPALILHQFKFVLKW*MDLL 10
+L Y+ FP L+L KFVL W M L
Sbjct: 78 SLACYAIACFMFPVLVLKPRKFVLLWTMGSL 108
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +2
Query: 356 QTSWVYLILQFAISEIIRKT--KLTCL 430
QTSW+ LI +F++SE + + +LT L
Sbjct: 396 QTSWIRLIHEFSLSETLTQATKRLTLL 422
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 197 FYSLFSLVQAQNEILENNPQLGYSLRDLAHGWAFVDR 307
+Y FS + A+ + NP L YS+ LA + FV R
Sbjct: 976 YYYYFSFLLAEMYLRYGNPSLRYSVMFLA-SYCFVTR 1011
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 453 LDIMYQCFRHVNLVFLIISDIANCKIK 373
L Y CF V LV + DI CK K
Sbjct: 406 LPYFYPCFFFVVLVHRVSRDIKKCKAK 432
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,935
Number of Sequences: 5004
Number of extensions: 57114
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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