Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9i14
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553...    29   2.4  
04_03_0331 + 14510848-14511124,14511139-14511528,14511708-145119...    29   3.2  
04_03_0361 + 14912420-14912720,14912945-14913117,14913474-149137...    29   4.2  
06_01_1035 + 8127164-8127406,8127993-8128117,8129029-8130352           28   5.5  
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815...    28   5.5  
12_01_0426 - 3356350-3356745,3357604-3357921                           28   7.3  
09_02_0403 + 8590195-8590443,8590583-8590690,8590788-8590901,859...    27   9.7  

>01_07_0095 +
           41053562-41053603,41054609-41054846,41055064-41055312,
           41055419-41055469,41056044-41056256,41056305-41056367,
           41056422-41056474,41056953-41057067,41057150-41057404,
           41057531-41058618
          Length = 788

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/109 (19%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
 Frame = +2

Query: 263 YSLRDLAHGWAFVDRLRDISDVEWSTWKHFI-QTSWVYLILQFAISEIIRKTKLTCLKHW 439
           +S+    H      R++ +    W   + +I + +W+ ++L  A++   R   L    + 
Sbjct: 368 FSIVKQCHSLGCFPRVKVVHTSRWIYGQIYIPEINWILMVLCVAVTVAFRDITLIGNAYG 427

Query: 440 YIISSIMFVLIYWGWKPLIIILMQPVIFSTIIF-LGGKKTSIWLTSIVL 583
               ++MFV  +     +I +  + +IF+   F L G    ++L+S ++
Sbjct: 428 VACMTVMFVTTFLMALIMIFVWQKNIIFALSFFLLFGSVEVVYLSSSLM 476


>04_03_0331 +
           14510848-14511124,14511139-14511528,14511708-14511997,
           14512080-14512154,14512194-14512409,14512727-14512795,
           14512941-14513891
          Length = 755

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 224 AQNEILENNPQLGYSLRDLAHGWAFVDRLR 313
           A  +++ +N Q G+  R L + W F+ RLR
Sbjct: 265 ATTDLVHDNEQFGFKYRGLKNMWTFILRLR 294


>04_03_0361 +
           14912420-14912720,14912945-14913117,14913474-14913779,
           14913862-14913936,14913976-14914191,14914741-14915527,
           14915587-14915681
          Length = 650

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 224 AQNEILENNPQLGYSLRDLAHGWAFVDRLR 313
           A  +++ +N Q G+  R L + W F+ RLR
Sbjct: 206 ATTDLVHDNEQFGFRYRGLKNMWTFILRLR 235


>06_01_1035 + 8127164-8127406,8127993-8128117,8129029-8130352
          Length = 563

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 317 ISDVEWSTWKHFIQTSWVYLILQFAISEIIRKTKLTCLKHWYIISSIMFVL 469
           +  V  S WK ++ T  +   LQ  I E  +  K  CL++ +++++ M+VL
Sbjct: 381 VGTVTTSPWKSYVLT--LLTRLQLNIEEKSKSYKDECLRNVFLMNNAMYVL 429


>01_06_0381 +
           28878811-28879120,28880189-28880331,28880753-28881532,
           28882568-28883968
          Length = 877

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 546 PPKNIIVENITGCIKIIIKGFQPQYIKTNIMLD 448
           PP+N+  +     +    +GF P  I+TN + D
Sbjct: 507 PPRNVTADEAAAIVMAATRGFGPANIQTNTLKD 539


>12_01_0426 - 3356350-3356745,3357604-3357921
          Length = 237

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 245 NNPQLGYSLRDLAHGWAFVDRLRDISDVEWSTWKHFIQTSWVY 373
           NNP  G++  DL  G   V R  D+ +     ++  + T WVY
Sbjct: 43  NNPTAGFAKVDLTGGDFQVQRPYDVPESRRFRYRDGVWTFWVY 85


>09_02_0403 +
           8590195-8590443,8590583-8590690,8590788-8590901,
           8590998-8591210
          Length = 227

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 275 DLAHGWAFVDRLRDISDVEWSTWKHFIQTSWVYL 376
           D  HGW   + LR + +  WS ++  ++T+ V L
Sbjct: 80  DYWHGWTIFEILRYMPEHNWSAYEEALKTNPVLL 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,865,193
Number of Sequences: 37544
Number of extensions: 275838
Number of successful extensions: 640
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)