Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9i12
         (184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   3.1  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    24   3.1  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    23   4.0  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    23   5.3  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    23   7.0  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    23   7.0  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    22   9.3  

>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 26  KIKSLLNLCCAIFNIIFRLKSGLG 97
           ++KS  N    IFNI+ R+  GLG
Sbjct: 203 RLKSRANEDPTIFNILKRISKGLG 226


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -3

Query: 182 FFLFVKYVYLFILTH 138
           ++LFV+ +Y +++TH
Sbjct: 57  YYLFVRQIYTYLVTH 71


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 45  ICVVLFLI*FSD*SQG*GLTLNNYYLYF 128
           IC   FL+  S  S+G G  L N YLYF
Sbjct: 116 ICNGGFLVSPSHRSKGIGRNLANAYLYF 143


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 96  PNPDFSLKIILKIAQHKFNKDFIFIG 19
           P+P   +KII  I    FN++F F G
Sbjct: 257 PSPRSEVKIIGIIDYSLFNREFNFFG 282


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 183 FFFVCKICLFIY 148
           FF++C+ C++ Y
Sbjct: 41  FFYLCRCCVYFY 52


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 25  YWSFCVSR 2
           YWSFCV R
Sbjct: 318 YWSFCVGR 325


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 102 TLNNYYLYFNFIMC 143
           T+N  YLYF++  C
Sbjct: 239 TINQIYLYFSYPSC 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,092
Number of Sequences: 5004
Number of extensions: 10003
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)