Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9i12
         (184 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   0.34 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   0.34 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   0.34 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   0.44 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    20   3.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   3.1  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    19   7.2  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    18   9.5  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 0.34
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 150 YSYT**N*NKDNNCSKLIPNPDFSLKIILKI 58
           Y Y   N N +NNC KL  N ++  +I + +
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYIEQIPIPV 126


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 0.34
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 150 YSYT**N*NKDNNCSKLIPNPDFSLKIILKI 58
           Y Y   N N +NNC KL  N ++  +I + +
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYIEQIPIPV 126


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 0.34
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 150 YSYT**N*NKDNNCSKLIPNPDFSLKIILKI 58
           Y Y   N N +NNC KL  N ++  +I + +
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYIEQIPIPV 126


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 0.44
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 150 YSYT**N*NKDNNCSKLIPNPDF 82
           Y Y   N N +NNC KL  N ++
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINY 118


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 126 NKDNNCSKLIPNPDFSLKIILKI 58
           N +NNC KL  N ++  +I + +
Sbjct: 99  NYNNNCKKLYYNINYIEQIPIPV 121


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 132 N*NKDNNCSKLIPN 91
           N N +NNC KL  N
Sbjct: 344 NNNYNNNCKKLYYN 357


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 102 TLNNYYLYFNFIMCKNK*INIFYK 173
           +L+N Y Y N+    N    ++YK
Sbjct: 84  SLSNNYKYSNYNNYNNYNKKLYYK 107


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 4  YSHRKTNKDKILIKFVLC 57
          Y+H  T + +I I   LC
Sbjct: 29 YNHYLTRRRRIEIAHALC 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,209
Number of Sequences: 438
Number of extensions: 704
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used:  2576460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)