Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9i10
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596...    32   0.25 
12_02_0380 - 18356210-18356329,18356415-18356673,18356754-183569...    28   5.4  
12_02_0202 - 15465885-15466241,15466539-15468122                       28   5.4  
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344...    28   5.4  
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005...    27   9.5  
01_05_0624 + 23772613-23774671,23774737-23775596                       27   9.5  

>05_02_0043 +
           5964749-5966406,5966725-5966791,5967174-5967329,
           5967782-5967865,5968020-5968073
          Length = 672

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +2

Query: 137 IKQILDHLRLKHGSTSEDLDQSVGSMLEKGTALGFLERKGSHYMNWLAKELCGK 298
           I +I +H+R+    + E L  S+G      +AL F+ERK  + ++++ K  C K
Sbjct: 43  IPRIHEHIRMIDRDSYEPLILSIGPYHNGSSALSFMERKKWNCLDYILKLSCQK 96


>12_02_0380 -
           18356210-18356329,18356415-18356673,18356754-18356917,
           18357235-18357397,18357465-18359020
          Length = 753

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/67 (31%), Positives = 35/67 (52%)
 Frame = +2

Query: 23  KLIRNFASRMTEIIETEPEYPDGRLVIQYLQEKRNGATIKQILDHLRLKHGSTSEDLDQS 202
           +L+ N  SR  E+  +E +Y  G  V+QY+ +        +ILD L    GS S  + +S
Sbjct: 610 QLLYNITSRALEL--SEHQY--GNYVVQYILDLHISWATDEILDKLEDHFGSLS--MQKS 663

Query: 203 VGSMLEK 223
             +++EK
Sbjct: 664 SSNVVEK 670


>12_02_0202 - 15465885-15466241,15466539-15468122
          Length = 646

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 35  NFASRMTEIIETEPEYPD-GRLVIQYLQEKRNG 130
           NF   + + +  + + PD G  V+QYLQE R+G
Sbjct: 71  NFKGSLVDAVSLQYDEPDLGVAVLQYLQEIRSG 103


>02_05_0889 -
           32532495-32533832,32533919-32534151,32534321-32534461,
           32534564-32535521
          Length = 889

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 71  EPEYPDGRLVIQYLQEKRNGATI 139
           +P++PDG L+ QYL     GATI
Sbjct: 707 DPKFPDGGLMSQYLDYLPLGATI 729


>01_06_0787 -
           31999632-32000045,32000128-32000214,32000295-32000584,
           32000670-32000844,32000930-32001142,32001227-32001328,
           32001418-32001822,32001922-32002134,32002312-32002357,
           32002602-32002867,32003936-32004012,32004095-32004170,
           32004339-32004418,32004945-32005036,32005132-32005171,
           32005301-32005400,32005815-32005962,32006071-32006153,
           32006207-32006383
          Length = 1027

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 47  RMTEIIETEPEYPDGRLVIQYLQEKRNGATIKQILDHLRLKHGSTSE 187
           R+ E +  E  +PD R   Q +QE+   + +K  L+ L+ +H +  E
Sbjct: 376 RIMEALFKESPHPDERQRQQAVQERHENSLLKSELEKLQDEHRAMRE 422


>01_05_0624 + 23772613-23774671,23774737-23775596
          Length = 972

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +2

Query: 95  LVIQYLQEKRNGATIKQILDHLRLKHGSTSEDLDQSVGSMLEKGTALGFLERKGSHYMNW 274
           L + YL E   G  IK ++D L     +  E+LD S   +      LG      S Y++W
Sbjct: 341 LRVLYLNENLIGVEIKDLMDKLPSCTWNKLEELDLSYNDITGNLDWLGSQTSLTSLYLSW 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,244,960
Number of Sequences: 37544
Number of extensions: 201668
Number of successful extensions: 485
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)