Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9i09
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 38 0.001
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 35 0.008
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 33 0.031
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.041
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 30 0.22
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 30 0.22
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 30 0.29
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 28 0.88
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.2
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 27 2.0
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 2.0
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.7
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 27 2.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.7
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 4.7
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 25 6.2
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr... 25 6.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 8.2
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = -1
Query: 325 VPNTGAAELAPKA-GVEPKPGVLVVPKAGVVDAPKAGVVVEPNAGVVEPK--PAVPNAGA 155
VP AA + P+ V +P V VVP+A V P A VV V +P P VP AG
Sbjct: 634 VPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAGQ 693
Query: 154 GVADVLPKRP 125
V+P P
Sbjct: 694 LNEPVVPPLP 703
Score = 29.5 bits (63), Expect = 0.38
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Frame = -1
Query: 325 VPNTGAAELAPKAGVEPKPGVL-VVP-------KAGVVDAPKAGVVVEPNAGVVEPK-PA 173
VP A + P+A P+P V V P + V P+A V +P A V P+ P+
Sbjct: 589 VPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPS 648
Query: 172 VPNAGAGVADVLPKRPVDG*DVAVMPNPGVAGIRLPPIFEISRKGKHLN 26
VP A V+P+ P A P V + PP + + LN
Sbjct: 649 VPQRPA--VPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAGQLN 695
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 35.1 bits (77), Expect = 0.008
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 63 GGNRIPATPGFGMTATSQPSTGLFGSTSATPAP---AFGTAGFGSTTPAFGSTTT 218
G N + G A ++PS FGST+ TPA +FG + PAFGST T
Sbjct: 429 GNNSSNFSFGANNNAATKPSGFGFGSTTTTPASGGFSFGQNANNAPKPAFGSTAT 483
Score = 34.3 bits (75), Expect = 0.013
Identities = 21/36 (58%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 90 GFGMTATSQPSTGLF-GSTSATPAPAFGTAGFGSTT 194
G TS PSTGLF GST PAF +GFGSTT
Sbjct: 309 GQNNNTTSTPSTGLFGGSTFNQQKPAF--SGFGSTT 342
Score = 31.5 bits (68), Expect = 0.094
Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +3
Query: 84 TPGFGMTATSQPSTGLFGSTSATPA-PAFG-----TAGFG--STTPAFGSTT 215
T FG +Q + GLFGS S TP FG T GFG +T P FGS T
Sbjct: 14 TGAFGQN--NQQTGGLFGSNSNTPGNTLFGSQNTSTTGFGQNTTQPLFGSNT 63
Score = 31.5 bits (68), Expect = 0.094
Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 16/62 (25%)
Frame = +3
Query: 78 PATPGFGMTATSQPS---TGLFGSTSAT------------PAPAFGT-AGFGSTTPAFGS 209
PA GFG T + + TGLFGS +AT A GT GFGS+T FGS
Sbjct: 333 PAFSGFGSTTNTTNTGTGTGLFGSNNATNTGTGQTTGGLFGGAATGTGTGFGSSTGGFGS 392
Query: 210 TT 215
T
Sbjct: 393 NT 394
Score = 31.5 bits (68), Expect = 0.094
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 93 FGMTATSQPSTGLFGSTSATPAPA-FGTAGFGS 188
FG +S P TGLFGST A + GT FGS
Sbjct: 528 FGSANSSTPGTGLFGSTQTNNATSNTGTGLFGS 560
Score = 30.7 bits (66), Expect = 0.16
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Frame = +3
Query: 66 GNRIPATPGFGMTAT-----SQPSTGLFG---STSATPAPAF----GTAGFG-STTPAFG 206
G++ +T GFG T S + GLFG +T+ T F GT FG S TPAFG
Sbjct: 41 GSQNTSTTGFGQNTTQPLFGSNTNGGLFGNRNNTTTTGGTGFGMSSGTGMFGQSNTPAFG 100
Query: 207 ST 212
T
Sbjct: 101 GT 102
Score = 30.7 bits (66), Expect = 0.16
Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 17/72 (23%)
Frame = +3
Query: 54 SKIGGNRIPATPG---FGMT----ATSQPSTGLFGSTSATPA---------PAFGTAG-F 182
S + G+ +TPG FG T ATS TGLFGS +A P+ T G F
Sbjct: 525 SNMFGSANSSTPGTGLFGSTQTNNATSNTGTGLFGSNNANTTNTGGSLFNKPSTTTGGLF 584
Query: 183 GSTTPAFGSTTT 218
G+TT STTT
Sbjct: 585 GNTTAQQPSTTT 596
Score = 30.3 bits (65), Expect = 0.22
Identities = 23/47 (48%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 90 GFGMTATSQPSTGLFGSTSATPAP--AFGTAGF-GSTTPAFGSTTTP 221
GFG T GLFGS S TPA AFGT+GF S A T P
Sbjct: 139 GFGSQGTGG---GLFGS-STTPATTNAFGTSGFVSSNANAVNGTANP 181
Score = 29.9 bits (64), Expect = 0.29
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +3
Query: 87 PGFGMTATSQPS---TGLFGSTSATPAPAFGTAGFGSTTPAFGSTTT 218
P FG TAT+ P TGLFG A T G+ FG+ T
Sbjct: 476 PAFGSTATTAPKPAGTGLFGGLGAGANTNTATNATGTGGSLFGNANT 522
Score = 29.1 bits (62), Expect = 0.50
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 132 FGSTSATPAPAFGTAGFGSTTPAFGSTTTP 221
FG+ S+T T+ FGST PAFG++TTP
Sbjct: 227 FGNASSTNT----TSAFGST-PAFGASTTP 251
Score = 29.1 bits (62), Expect = 0.50
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 78 PATPGFGMTATSQPSTGL-FG-STSATPAPAFGTAGFGSTTPA 200
P+ GFG T T+ S G FG + + P PAFG+ + PA
Sbjct: 447 PSGFGFGSTTTTPASGGFSFGQNANNAPKPAFGSTATTAPKPA 489
Score = 26.2 bits (55), Expect = 3.5
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +3
Query: 78 PATPGFGMTATSQ--PSTGLFGSTSATPAPAFGTAGFGS---TTPAFGSTT 215
P+T FG + +Q P+ FGST+ T GT FGS T G TT
Sbjct: 318 PSTGLFGGSTFNQQKPAFSGFGSTTNTTNTGTGTGLFGSNNATNTGTGQTT 368
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 81 ATPGFGMTATSQPSTGLFGSTSATPAPAFGTAGFGSTTPAFGSTTTP 221
+T GFG +QP++G G+ G GFG+ + T P
Sbjct: 386 STGGFGSNTNNQPNSGTMGT---------GLFGFGANNNTANNNTAP 423
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 33.1 bits (72), Expect = 0.031
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 78 PATPGFGMTATSQPSTGLFG-STSATPAPAFGTAGFGSTTPAFGS 209
P T FG +T S GLFG ST + + FG + TTP F +
Sbjct: 169 PNTSTFGQFSTQPASAGLFGQSTQPSGSTGFGLSNNTQTTPFFSA 213
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Frame = +3
Query: 84 TPGFGMTATSQPSTGLFGSTSATPAPAFG---------TAGFGSTT-PAFGST 212
TP FG T T +TG T + FG + GFG T AFG T
Sbjct: 7 TPSFGSTGTQNQNTGTSAGTGLFSSNTFGNNTQANTPASTGFGGVTGGAFGQT 59
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 96 GMTATSQPSTGLFGSTSATPAPAFGTAGFGSTTPAFGST 212
G+ ++P+T FG S PA A FG +T GST
Sbjct: 162 GLFDQNRPNTSTFGQFSTQPASA---GLFGQSTQPSGST 197
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.041
Identities = 30/91 (32%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Frame = -1
Query: 343 PKAGVVVPNTGAAELAPKAGVEPKPGVLVVP---KAGVVDAPKAGVVVEPNAGVVEPKPA 173
PK V P AP PKP V P +G PK V P P
Sbjct: 1124 PKPSVAAPPVPVPSGAPPV---PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Query: 172 VPNAGAGVADVLPKR---PVDG*DVAVMPNP 89
VP AGV V P PV V V P P
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 30.3 bits (65), Expect = 0.22
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 102 TATSQPSTGLFGSTSATPAPAFGTAGFGSTTPAFGST 212
T+++ PS GLFGS +A+ A T FG ST
Sbjct: 44 TSSTAPSGGLFGSNNASNTSAPSTFSFGKAATTGNST 80
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 30.3 bits (65), Expect = 0.22
Identities = 21/56 (37%), Positives = 24/56 (42%)
Frame = -1
Query: 310 AAELAPKAGVEPKPGVLVVPKAGVVDAPKAGVVVEPNAGVVEPKPAVPNAGAGVAD 143
AA P+A P P V+ P A V P A V A V P PA A A A+
Sbjct: 356 AAAQYPQAAFPPPP-VMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAPAAE 410
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 29.9 bits (64), Expect = 0.29
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +3
Query: 93 FGMTATSQPSTGLFGSTSATPAPAFGTAGFGST----TPAFGSTTT 218
FG T T+ G G T ++ AP FG + FG T T +F +TTT
Sbjct: 41 FGSTNTN---VGAGGPTGSSSAPPFGNSIFGKTQQQPTTSFSNTTT 83
Score = 28.7 bits (61), Expect = 0.67
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 90 GFGMTATSQPSTGLFGSTSAT-PAPAFGTAG-FGSTTPAFGS 209
G + A S STG+FG ++ T P FG+ FGST G+
Sbjct: 9 GSSIKAPSIGSTGVFGQSNTTKPTAPFGSGSIFGSTNTNVGA 50
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 28.3 bits (60), Expect = 0.88
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 51 ISKIGGNRIPAT---PGFGMTATSQPS-TGLFGSTSATPAPAFGTAGFGSTTPA 200
++K G+ PA+ GF A + P +FG+++ P+ AF T PA
Sbjct: 981 MAKDAGDTAPASGFKSGFSFGANNSPQPASMFGTSTPAPSSAFAFGNQSGTNPA 1034
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 78 PATPGFGMTATSQPSTGL--FGSTSATPAPAFGTAGFGSTTPAFGSTTTP 221
P T TATS ST L STSAT A + STT S+T P
Sbjct: 358 PLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAP 407
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 78 PATPGFGMTATSQPSTGL--FGSTSATPAPAFGTAGFGSTTPAFGSTTTP 221
P T TATS ST L STSAT A + STT S+T P
Sbjct: 472 PLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAP 521
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +3
Query: 39 PFLEISKIGGNRIPATPGFG---MTATSQPSTGLFGSTSATPAPAFGTAGFGSTTPAFGS 209
P ++ +TP FG +T+++ STG F +T++ G+ ++TP S
Sbjct: 554 PLTSVNSTTATSASSTP-FGNSTITSSASGSTGEFTNTNSGNGDVSGSVTTPTSTPLSNS 612
Query: 210 TTTP 221
T P
Sbjct: 613 TVAP 616
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 78 PATPGFGMTATSQPSTGLFGSTSATPAPAFG 170
P P FG +A + S+ F S++ TP +FG
Sbjct: 200 PGAPRFGFSAPALGSSFQFNSSAFTPKGSFG 230
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +3
Query: 78 PATPGFGMTATSQPSTGLFGSTSATPAPAFGTAGFGSTTPAFGSTT 215
P++PG+ + PS+ + TS + +P + + T+P++ T+
Sbjct: 1560 PSSPGYSTSPAYMPSSPSYSPTSPSYSPT--SPSYSPTSPSYSPTS 1603
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +3
Query: 78 PATPGFGMTATSQPSTGL----FGSTSATPAPAFGTAGFGSTTPAFGSTTT 218
PA P +GM + STG+ S+ + +P+ T +TT A + TT
Sbjct: 319 PAPPAYGMANPAYGSTGIRSSSIPSSGSIRSPSLTTTSAQATTNATNNITT 369
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = -2
Query: 192 LSNQNLQYQMRALE*QMYSQKGLLMA-EMLQSCQILGL----QVYGYRQFLRF 49
L+ +NLQ QM A YS +L+A +L +C IL L +Y Y++ L F
Sbjct: 383 LALENLQSQMVAQS-SSYSLDRMLVAISILGACSILSLILFRNLYNYKELLAF 434
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = -1
Query: 184 PKPAV--PNAGAGVADVLPKRPVDG*DVAVMPNPGVAGIRLPP 62
P PAV P V P P+ G P PGVAG PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 45 LEISKIGGNRIPATPGFGMTATSQPSTGLFGS 140
L I+ G + PG +TA S G+FGS
Sbjct: 598 LRITDFGACDVLCNPGDDITAVESKSMGIFGS 629
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 268 GVLVVPKAGVVDAPKAGVVVEPNAGVVEPKPAVPNA 161
G ++ K ++ AGVVVE GV KP P A
Sbjct: 55 GDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVA 90
>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 134 WEYICYSSARIWYCRFWFDNTGI 202
WEY +A W+C+ +DNT +
Sbjct: 95 WEY---RTANSWFCKMKWDNTNV 114
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 8.2
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -1
Query: 322 PNTGAAELAPKAGVEPKPGVLVVPKAGVVDAPKAGVVVEPNAGVVEPKPAVPN 164
P+ A ++ P A + V V +AP P A V + PAVPN
Sbjct: 1439 PSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPN 1491
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,354
Number of Sequences: 5004
Number of extensions: 48030
Number of successful extensions: 201
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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