Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9i08
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50874-6|CAA90765.1| 759|Caenorhabditis elegans Hypothetical pr... 29 3.4
AC006742-5|AAF60496.1| 239|Caenorhabditis elegans Hypothetical ... 29 3.4
AC006742-4|AAF60495.1| 239|Caenorhabditis elegans Hypothetical ... 29 3.4
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr... 29 4.4
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ... 29 4.4
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 28 5.9
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 28 5.9
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 28 5.9
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 28 5.9
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 28 5.9
>Z50874-6|CAA90765.1| 759|Caenorhabditis elegans Hypothetical
protein R10E4.4 protein.
Length = 759
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 373 NLSLMKNNYEDLEIKLSKF-SQELPKLEGQMEIL 471
NL+ +KN ED+E+KL KF + LP LE +I+
Sbjct: 73 NLNHLKNFDEDIEMKLRKFPGKVLPALEEAAKIV 106
>AC006742-5|AAF60496.1| 239|Caenorhabditis elegans Hypothetical
protein Y38C1AB.7 protein.
Length = 239
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 298 EYHCHTCNTKCDLNGITRNI-NDISRNLSLMKNNYEDLEIKLSKFSQELP-KLEGQMEIL 471
E H + ++ G+ R + N + RN S MK ++ + Q + K+E M+++
Sbjct: 99 ELHDNFKSSDTKQQGLNRKLTNKMERNRSEMKQFKMEMMSSFNGLKQNMDTKMEEMMQLM 158
Query: 472 EALANTVETKDFGWNPNS 525
AL + ++ NP S
Sbjct: 159 RALIQDLTSQKLAQNPES 176
>AC006742-4|AAF60495.1| 239|Caenorhabditis elegans Hypothetical
protein Y38C1AB.3 protein.
Length = 239
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 298 EYHCHTCNTKCDLNGITRNI-NDISRNLSLMKNNYEDLEIKLSKFSQELP-KLEGQMEIL 471
E H + ++ G+ R + N + RN S MK ++ + Q + K+E M+++
Sbjct: 99 ELHDNFKSSDTKQQGLNRKLTNKMERNRSEMKQFKMEMMSSFNGLKQNMDTKMEEMMQLM 158
Query: 472 EALANTVETKDFGWNPNS 525
AL + ++ NP S
Sbjct: 159 RALIQDLTSQKLAQNPES 176
>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
F54D1.5 protein.
Length = 1406
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +1
Query: 292 MLEYHCHTCNTKCD-LNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEI 468
+L+ + TK D ++ + + I +N L +N + + L S E+PK+ +
Sbjct: 1254 LLKSRVYDIETKIDHISNSSDEVVQILKNKKLSQN-FAASSLSLPDTSIEVPKIT--KTL 1310
Query: 469 LEALANTVETKDFGWNPNSPLLLNAERIQTHSVFDSGNF 585
++ + V +D SPLL N +R T +D NF
Sbjct: 1311 IDCHLSPVSIED-RLATRSPLLANLQRDHTLRKYDDANF 1348
>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1122
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +1
Query: 292 MLEYHCHTCNTKCD-LNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEI 468
+L+ + TK D ++ + + I +N L +N + + L S E+PK+ +
Sbjct: 970 LLKSRVYDIETKIDHISNSSDEVVQILKNKKLSQN-FAASSLSLPDTSIEVPKIT--KTL 1026
Query: 469 LEALANTVETKDFGWNPNSPLLLNAERIQTHSVFDSGNF 585
++ + V +D SPLL N +R T +D NF
Sbjct: 1027 IDCHLSPVSIED-RLATRSPLLANLQRDHTLRKYDDANF 1064
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 331 DLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALAN 486
+L R + ++ + K N+E L+ + K Q+L + Q+E E LAN
Sbjct: 1848 NLGRADRRVRELQFQVDEDKKNFERLQDLIDKLQQKLKTQKKQVEEAEELAN 1899
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 331 DLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALAN 486
+L R + ++ + K N+E L+ + K Q+L + Q+E E LAN
Sbjct: 1848 NLGRADRRVRELQFQVDEDKKNFERLQDLIDKLQQKLKTQKKQVEEAEELAN 1899
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 343 ITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEA-LANTVETK 501
+ +++ND + LS + DLE + K QE+ L+ +E ++ LA ++E K
Sbjct: 922 VEKSLNDANDRLSEHEEKNADLEKQRRKAQQEVENLKKSIEAVDGNLAKSLEEK 975
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 343 ITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEA-LANTVETK 501
+ +++ND + LS + DLE + K QE+ L+ +E ++ LA ++E K
Sbjct: 922 VEKSLNDANDRLSEHEEKNADLEKQRRKAQQEVENLKKSIEAVDGNLAKSLEEK 975
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 343 ITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEA-LANTVETK 501
+ +++ND + LS + DLE + K QE+ L+ +E ++ LA ++E K
Sbjct: 922 VEKSLNDANDRLSEHEEKNADLEKQRRKAQQEVENLKKSIEAVDGNLAKSLEEK 975
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 331 DLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALAN 486
+L R + ++ + K N+E L+ + K Q+L + Q+E E LAN
Sbjct: 1851 NLGRADRRVRELQFQVDEDKKNFERLQDLIDKLQQKLKTQKKQVEEAEELAN 1902
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,739,159
Number of Sequences: 27780
Number of extensions: 323485
Number of successful extensions: 1001
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -