Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9i03
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814...    28   5.3  
06_03_0251 + 18715023-18715106,18715274-18715396,18715509-187156...    28   7.0  
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    28   7.0  
04_04_1186 + 31567425-31567438,31568168-31568254,31568335-315684...    28   7.0  
08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170...    27   9.2  

>03_06_0376 +
           33479776-33479958,33481055-33481236,33481345-33481469,
           33481858-33482057,33482629-33482762,33483095-33483158,
           33483764-33484441,33484723-33484839
          Length = 560

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 20/81 (24%), Positives = 37/81 (45%)
 Frame = +1

Query: 103 YTLYRGVPVNKSHLDFFNSLSEMFDVNFWTPPGSLYKPIDFVLAPGDKKVFLKMAEEYDV 282
           +T   G  V K     F +   M +++ +TP  S   P D +L    K +FL +    +V
Sbjct: 329 FTSDHGTVVGKDDQFLFGASLIMINMDHFTP-ASHPSPYDCILDDETKNIFLPIHLSEEV 387

Query: 283 YLSTLIADVQRAFDMQRVKSY 345
           Y+   +    +  D+ +++SY
Sbjct: 388 YVGDPVIKF-KDIDVVKIESY 407


>06_03_0251 +
           18715023-18715106,18715274-18715396,18715509-18715611,
           18716061-18716134,18716208-18716288,18716370-18716522,
           18717435-18717506,18718313-18718396
          Length = 257

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +1

Query: 43  YLISFLLFHPNYCATKKYTNYTLYRG--VPVNKSHLDFFNSLSEMFDVNFWTP 195
           ++  +L  HP YC+   Y   T Y G  VPV   ++    S    FD NF  P
Sbjct: 66  FMKEWLNDHPRYCSHNFYVGGTSYAGKVVPVITQYI----SEGSKFDKNFHVP 114


>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
            29288625-29288903,29289047-29289122,29289725-29289787,
            29292116-29292164,29292413-29292504,29293017-29293068,
            29293209-29293271,29293382-29293431,29293941-29294016,
            29294444-29294656,29294763-29294869,29294966-29295074,
            29295489-29295689,29295773-29296033,29296154-29296171,
            29296287-29296397,29296755-29297030,29297108-29297382,
            29297814-29298165,29298371-29298655,29298715-29299261,
            29301658-29301781,29301871-29301946,29302062-29302136,
            29302300-29302353,29302833-29302892,29302977-29303093,
            29303228-29303361,29303480-29303682,29303879-29303976,
            29304358-29304461,29304537-29304702,29304803-29304925,
            29305047-29305129,29305217-29305358,29305523-29305549,
            29305784-29305854,29305930-29306518
          Length = 2046

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/67 (25%), Positives = 35/67 (52%)
 Frame = -1

Query: 380  SFQSNEPKFLLMYDLTLCISNALCTSAMSVDKYTSYSSAIFRKTFLSPGAKTKSIGLYKE 201
            + Q + PK +L++ L++CIS  L    ++   Y ++ S +   T ++   +T   G+ + 
Sbjct: 1521 ALQESRPKSVLVHSLSVCIS-LLDPKRLASASYQAFRSNLSHGTLVTASPETVD-GMLES 1578

Query: 200  PGGVQKL 180
             G + KL
Sbjct: 1579 LGDLLKL 1585


>04_04_1186 +
           31567425-31567438,31568168-31568254,31568335-31568410,
           31568516-31568590,31568678-31568731,31569722-31569781,
           31569910-31570026,31570389-31570483,31570603-31570805,
           31571224-31571321,31571585-31571688,31571872-31571920,
           31571988-31572110,31572566-31572648,31573533-31573674,
           31574399-31574428,31574452-31574508,31574545-31574615,
           31574715-31575318
          Length = 713

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = -1

Query: 380 SFQSNEPKFLLMYDLTLCISNALCTSAMSVDKYTSYSSAIFRKTFLSPGAKTKSIGLYKE 201
           +F+ + PK +L++ L++CIS  L    + +  Y  + S +   T ++   +T   G+   
Sbjct: 202 AFEDSRPKSVLVHSLSVCIS-LLDPKRLVLASYQVFRSQLSHATLVTASPETVG-GMLDS 259

Query: 200 PGGVQKL 180
            G + KL
Sbjct: 260 LGDLLKL 266


>08_01_0213 -
           1703682-1703696,1703824-1703919,1704033-1704104,
           1704372-1704444,1704508-1704710,1705058-1706330,
           1706800-1706868,1706940-1707088,1707275-1707487,
           1708385-1708669
          Length = 815

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 625 ISASRESAEACTSQNTDLSILWHEYRLPQSL 533
           I+ S E+ E C ++  DLS L+++   PQSL
Sbjct: 380 IATSGENNEKCLNEYQDLSRLFNDAATPQSL 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,780,933
Number of Sequences: 37544
Number of extensions: 338188
Number of successful extensions: 745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)