Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9h22
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   4.9  
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    25   6.5  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   6.5  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    24   8.6  

>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 78  LFFIFII*VHYGLNSKIKVYVNIVFKIKFSNK 173
           +FF+ +   HYG+N+  K    +V  I+ S K
Sbjct: 454 IFFLNLAFHHYGVNATFKALEQLVQSIRDSEK 485


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 369 TGLEYDLARRSCNFF 325
           TGL Y L  R+CN F
Sbjct: 94  TGLSYSLLERNCNHF 108


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 332 IFLSPCLDS*Y--CFIIYPVSELL*FKIHTFQRQHN 231
           I L P L+S Y  CF+ +P  ELL    H  +R H+
Sbjct: 40  IHLIPHLNSLYSICFLGFPGQELLVASDHIQKRNHH 75


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 79  YFLYLLFKYITG 114
           YF+ LLFKYI+G
Sbjct: 360 YFINLLFKYISG 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,489,354
Number of Sequences: 5004
Number of extensions: 27383
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)