Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9h19
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    96   2e-21
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    90   1e-19
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    27   1.0  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   5.5  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 95.9 bits (228), Expect = 2e-21
 Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
 Frame = +2

Query: 59  MPREIXDIKDFLIKARRKDAXSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 235
           MPR+I DIK FL  ARRKDA S +IKKN  ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 236 LPPGLXVKEV 265
           LPP L V EV
Sbjct: 61  LPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 89.8 bits (213), Expect = 1e-19
 Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = +2

Query: 59  MPREIXDIKDFLIKARRKDAXSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 235
           MPR++ DIK FL  A R DA S ++KKN    VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 236 LPPGLXVKEV 265
           LPP L V EV
Sbjct: 61  LPPALTVTEV 70


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 131 IKKNPENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLXVKEVK 268
           ++  P+  K K +      T+VITD+E  ++  +KQ +P  +   EVK
Sbjct: 205 VRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 42  NYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRF 167
           N   ST + +  ++K+F  R   +TP ++K R +L+ S   F
Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 957,772
Number of Sequences: 5004
Number of extensions: 14133
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)