Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9h09
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...   226   2e-60
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    27   2.1  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   2.8  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   4.9  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    25   6.5  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   8.6  

>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score =  226 bits (553), Expect = 2e-60
 Identities = 106/169 (62%), Positives = 135/169 (79%)
 Frame = +3

Query: 105 GKPVKTRKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAA 284
           GK  + R+E DTFG + VP +K +GAQT RS+ NF IGG +ER+P P++ AFG+LK+AAA
Sbjct: 15  GKHGEFRQESDTFGPIQVPAEKYWGAQTQRSLQNFRIGGEKERLPLPLVRAFGVLKRAAA 74

Query: 285 KVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEVIANRAI 464
            VN E+GL+ K+ADAI QA  +VI G+L  + +FPLV++QTGSGTQSNMN+NEVIANRAI
Sbjct: 75  SVNREFGLDPKLADAIEQAAQEVIDGRL--DDNFPLVVFQTGSGTQSNMNSNEVIANRAI 132

Query: 465 QILGGKLGSKDPVHPNDHVNKSQSSNDTYPTAMHIAVAMELRDRLMPGL 611
           +ILGG LGSK PVHPNDHVN SQSSNDT+PT MHIA  +++   L+P +
Sbjct: 133 EILGGTLGSKKPVHPNDHVNMSQSSNDTFPTVMHIASVLQIHTHLLPAM 181


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 422 LSTGASLPDDEGEVTLAVELPADDVIAGLHDRVGNFLFKSIFD 294
           LS+G SLP  E EVT +     DD +A     +     +S  D
Sbjct: 220 LSSGESLPKKEEEVTKSPSFTLDDSVASNEQTLAQLNIESPVD 262


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 468 ILGGKLGSKDPVHPNDHVNKSQSS 539
           +L   LG+ D  HP++H+ +++SS
Sbjct: 11  LLANTLGNNDENHPSNHIARAKSS 34


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 87   SCKPFLFTTKNLSTVKFRVKQLTVYVKY 4
            SC+P++ ++ NL+T +     + VY  Y
Sbjct: 990  SCRPYMISSSNLATTRLPRDLVDVYETY 1017


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 237 ACVPQFHRSGSSSPNA---RSARHIACHLARPAPQRYL 133
           AC+P+  R     P+     +A  + C LAR AP+ YL
Sbjct: 172 ACIPKL-RERLDDPDTSVVNAAVSVICELARRAPKNYL 208


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 108 KPVKTRKEKDTFGELDVPDDKLYGAQTVRSVMNFP 212
           K ++ R   D    LDVP DK Y +  + SV+  P
Sbjct: 317 KKLRKRLNGDVVHNLDVPHDKSYKSNYLFSVVLSP 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,824
Number of Sequences: 5004
Number of extensions: 52750
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)