Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9h09
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0935 - 12517564-12517650,12517995-12518060,12518156-125181... 229 1e-60
08_01_0421 - 3735155-3736067,3736154-3736176 30 1.3
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 29 2.2
07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026 29 2.2
03_02_0201 + 6363459-6363934,6364020-6364317,6364452-6364766 29 2.9
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 28 5.1
10_02_0199 + 6668902-6669293,6669825-6669882 28 6.7
07_01_0130 - 963856-965454 28 6.7
03_06_0284 + 32836171-32836377,32836466-32836568,32836681-328367... 28 6.7
01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692 28 6.7
10_01_0103 + 1253613-1253783,1253994-1254758,1254860-1255228 27 8.9
07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761... 27 8.9
05_04_0312 - 20123892-20124085,20124183-20124508,20124728-201247... 27 8.9
05_04_0301 + 19983073-19983196,19984508-19985105,19985190-199854... 27 8.9
>03_02_0935 -
12517564-12517650,12517995-12518060,12518156-12518185,
12518279-12518377,12518578-12518673,12519221-12519271,
12519358-12519424,12519516-12519610,12519928-12520009,
12520609-12520658,12520741-12520791,12521749-12521832,
12521918-12522028,12522276-12522425,12522858-12522975,
12523118-12523290
Length = 469
Score = 229 bits (561), Expect = 1e-60
Identities = 115/181 (63%), Positives = 135/181 (74%), Gaps = 3/181 (1%)
Frame = +3
Query: 78 ACTTCLNPE-GKPVKT--RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPV 248
A L P +P+ T R+E+DTFG + VP+DKL+GAQT RS+ NF IGG ERMP P+
Sbjct: 25 AAALLLRPALARPISTGFREERDTFGPIRVPNDKLWGAQTQRSLQNFDIGGERERMPVPI 84
Query: 249 IVAFGILKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSN 428
I AFG+LKK AAKVN+EYGL+ I AIMQA +V G+L + HFPLVIWQTGSGTQSN
Sbjct: 85 IRAFGVLKKCAAKVNMEYGLDPTIGKAIMQAAQEVAEGQL--DDHFPLVIWQTGSGTQSN 142
Query: 429 MNTNEVIANRAIQILGGKLGSKDPVHPNDHVNKSQSSNDTYPTAMHIAVAMELRDRLMPG 608
MN NEVIANRA +ILG K G K VHPNDHVN+SQSSNDT+PT MHIA A E+ R +P
Sbjct: 143 MNANEVIANRAAEILGHKRGEKF-VHPNDHVNRSQSSNDTFPTVMHIAAATEINSRFVPS 201
Query: 609 L 611
L
Sbjct: 202 L 202
>08_01_0421 - 3735155-3736067,3736154-3736176
Length = 311
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 422 VQHEHERGDCEP--RHTNTGRETGQQGPGASQRPREQV 529
V H+H RGD P R+ N G E QQ P + Q PR+QV
Sbjct: 73 VHHDH-RGDYPPDQRYGNGGEEARQQQP-SWQPPRDQV 108
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 549 TCRSSSATCSRGRWDAPGPCCPVS 478
+C +S +C RGRW AP C P +
Sbjct: 31 SCTTSCRSCGRGRWRAPA-CSPAA 53
>07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026
Length = 453
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 500 RVLAAQFPAQYLYGAVRNHL-VRVHVGLSTGAS-LPDDE 390
++ PA++ YG VR+++ R G + AS +PDDE
Sbjct: 58 KIYMYDLPAKFTYGVVRSYMAARARAGAAGAASAIPDDE 96
>03_02_0201 + 6363459-6363934,6364020-6364317,6364452-6364766
Length = 362
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 380 SLPPRHLADWLRYSVQHEHERGD-CEPRHTN 469
S P + DWLRY++QH + C P H++
Sbjct: 108 SATPEQINDWLRYAMQHTIKTFKLCSPYHSS 138
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 237 ACVPQFHRSGSSSPNARSARHIACHLARPAP 145
A P+ HR G ++P R RH A P P
Sbjct: 10 AATPRRHRHGPATPRRRRRRHAAAVATPPPP 40
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 365 ALPRGSLPPRHLADWLR 415
A PR LPP HL WL+
Sbjct: 118 ATPRPGLPPHHLPSWLK 134
>07_01_0130 - 963856-965454
Length = 532
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +3
Query: 285 KVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQT 407
+V + + ++K+ MQ DV+SG++ +G F +V+W++
Sbjct: 457 RVGVAHEEDQKVPKIDMQ---DVLSGRVAPDGRFDVVLWRS 494
>03_06_0284 +
32836171-32836377,32836466-32836568,32836681-32836757,
32836846-32837037,32837144-32837263,32837350-32837412,
32837537-32837671,32837827-32837991,32838104-32838181,
32840303-32840389,32840548-32840619,32840925-32840951,
32842292-32842390,32843143-32843213,32843710-32843838,
32843936-32844012,32844186-32844226,32844319-32844393,
32844525-32844673,32844766-32844870,32844948-32845023,
32845465-32845541,32845761-32846529
Length = 997
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 90 CLNPEGKPVKTRKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEER 233
C +PEG+P T + + F + D L+G R ++ I G+ R
Sbjct: 63 CFHPEGRPAPTTYD-EVFKSIFAYIDHLFGLVRPRKLIYMAIDGVAPR 109
>01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692
Length = 540
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 285 WRLLSLVYRKRQSRDKACVPQFHRSGSSSPNARSARHIA 169
WR LV + +Q + PQ + +SSP A+SA +A
Sbjct: 307 WRTQPLVVQPQQYNIQQVPPQLVQQQTSSPQAQSAPQVA 345
>10_01_0103 + 1253613-1253783,1253994-1254758,1254860-1255228
Length = 434
Score = 27.5 bits (58), Expect = 8.9
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Frame = +3
Query: 270 KKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYRE---GHFPLVIWQTGSGTQSNMNTN 440
KK AA I + K+ D I A + +S E I SG + +
Sbjct: 132 KKLAANEKILKNINVKL-DGISSAFQNQLSFNKMIETQLAQLAAFIPANESGRITGQLEH 190
Query: 441 EVIANRAIQILGGKLGSKDPVHPNDHVNKSQSSNDTYP 554
V +AI GGK ++DP +PN +S SS + P
Sbjct: 191 SVKNVKAITTRGGK-STRDPPYPNPAGTRSSSSQEALP 227
>07_03_1619 +
28174991-28175804,28175945-28175968,28176075-28176170,
28176285-28176466,28176623-28176836,28177262-28177499,
28177709-28177865,28177950-28178246
Length = 673
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 20 VSCLTR-NLTVDKFFVVNKNGLHDMSQPRRQAGQNEEGKRY 139
V CL R + + FF ++ LH QP +Q+G + K +
Sbjct: 243 VRCLLRYEMASNSFFHIDNRTLHLQKQPTQQSGSSSGAKTW 283
>05_04_0312 -
20123892-20124085,20124183-20124508,20124728-20124732,
20125063-20125670,20125744-20125884,20126067-20126194,
20126288-20126329,20126613-20126755
Length = 528
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 236 ALSRDCRFRYTKESSRQSQYRIWT*KENCRR 328
A S+DC Y SSRQS +W E R
Sbjct: 61 ARSKDCDMEYDDSSSRQSGEPLWEHAEGVER 91
>05_04_0301 +
19983073-19983196,19984508-19985105,19985190-19985442,
19985947-19985979
Length = 335
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 267 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLV 395
L+ AA +V YGLE +AD+++ I K E P++
Sbjct: 71 LRCAAHRVAQHYGLETTVADSLVDGSVSKIVAKKTSESKLPVI 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,602,374
Number of Sequences: 37544
Number of extensions: 406928
Number of successful extensions: 1228
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -