Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9h09
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase prot...   261   3e-70
AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase prot...    46   2e-05
U56963-1|AAB38120.1|  161|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z68227-18|CAA92521.1|  869|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z68220-11|CAA92493.1|  869|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z81104-2|CAB70254.1|  233|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81526-7|CAB04266.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL110501-8|CAI06051.1|  175|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z73103-2|CAA97425.2|  400|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z47073-2|CAA87373.1|  507|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U51997-6|AAG24064.1|  159|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF016662-5|AAB66059.2|  116|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase protein
           1, isoform a protein.
          Length = 501

 Score =  261 bits (639), Expect = 3e-70
 Identities = 125/165 (75%), Positives = 139/165 (84%)
 Frame = +3

Query: 117 KTRKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNI 296
           K RKE+DTFGEL+VP DK YGAQT RS MNF IGG EERMP PVI AFGILKKAAA VN 
Sbjct: 40  KIRKERDTFGELEVPADKYYGAQTARSQMNFKIGGPEERMPIPVIHAFGILKKAAALVNT 99

Query: 297 EYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEVIANRAIQILG 476
           E+GL+KK+ADAI QA D+V+ GKL  + HFPLV WQTGSGTQSNMN NEVI+NRAI+ILG
Sbjct: 100 EFGLDKKLADAISQAADEVVDGKL--DEHFPLVTWQTGSGTQSNMNVNEVISNRAIEILG 157

Query: 477 GKLGSKDPVHPNDHVNKSQSSNDTYPTAMHIAVAMELRDRLMPGL 611
           G+LGSK PVHPNDHVN SQSSNDT+PTAMHIAV  E+  RL+P L
Sbjct: 158 GELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAVGREVNSRLLPAL 202


>AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase protein
           1, isoform b protein.
          Length = 328

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/28 (71%), Positives = 23/28 (82%)
 Frame = +3

Query: 528 SQSSNDTYPTAMHIAVAMELRDRLMPGL 611
           SQSSNDT+PTAMHIAV  E+  RL+P L
Sbjct: 2   SQSSNDTFPTAMHIAVGREVNSRLLPAL 29


>U56963-1|AAB38120.1|  161|Caenorhabditis elegans Hypothetical
           protein T13A10.2 protein.
          Length = 161

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 501 PGPCCPVSRPVFVWRGSQSPRSCSCWTEY 415
           P PCC V    +  RG + P+ CSC   Y
Sbjct: 93  PRPCCAVCHDSYASRGPKKPKVCSCLHTY 121


>Z68227-18|CAA92521.1|  869|Caenorhabditis elegans Hypothetical
           protein F49C12.15 protein.
          Length = 869

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +3

Query: 267 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEV 446
           LKK +A  N+   LEKK           +IS K        + ++ TGS   + M+  ++
Sbjct: 604 LKKPSASKNLASLLEKKEEARKTDVTSSMISSKPPTSPGTSVYMYNTGSANSTFMSAKDL 663

Query: 447 IANRAIQILGGKLGSKDP 500
              R     G +  SK P
Sbjct: 664 HKERVAASTGPRSASKSP 681


>Z68220-11|CAA92493.1|  869|Caenorhabditis elegans Hypothetical
           protein F49C12.15 protein.
          Length = 869

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +3

Query: 267 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEV 446
           LKK +A  N+   LEKK           +IS K        + ++ TGS   + M+  ++
Sbjct: 604 LKKPSASKNLASLLEKKEEARKTDVTSSMISSKPPTSPGTSVYMYNTGSANSTFMSAKDL 663

Query: 447 IANRAIQILGGKLGSKDP 500
              R     G +  SK P
Sbjct: 664 HKERVAASTGPRSASKSP 681


>Z81104-2|CAB70254.1|  233|Caenorhabditis elegans Hypothetical
           protein M199.4 protein.
          Length = 233

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 425 QHEHERGDCEPRHTNTGRETGQQGPGASQ 511
           +H ++  DCEP     GRE G++GP  +Q
Sbjct: 19  RHHYDYYDCEPERGPRGRE-GREGPRGAQ 46


>Z81526-7|CAB04266.2|  330|Caenorhabditis elegans Hypothetical
           protein F33H2.8 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 347 IAGLHDRVGNFLFKSIFDIDFGGCFL*YTESDNHG 243
           +A  H+R G       FD  F GC L Y  +  +G
Sbjct: 118 LANSHNRTGELFLVRSFDFLFAGCILFYYSTRQNG 152


>AL110501-8|CAI06051.1|  175|Caenorhabditis elegans Hypothetical
           protein Y79H2A.12 protein.
          Length = 175

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 498 PVHPNDHVNKSQSSNDTYPTAMHIAVAMELRDRLMPGL 611
           PV+ +  V     SNDTYP  + +  A E  DR + GL
Sbjct: 89  PVYFSSQVASGYESNDTYPNFLGVKTAEE--DRFVIGL 124


>Z73103-2|CAA97425.2|  400|Caenorhabditis elegans Hypothetical
           protein C08F8.3 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = +3

Query: 393 VIWQTGSGTQSNMNTNEVIANRAIQILGGKLGSKDPVHPNDHVNKSQSSNDTYPTAMHIA 572
           V+ + G GT+++M  NE+ A  A QI   + G    V P  H N  + S+    T  ++ 
Sbjct: 21  VVEKKGDGTRTSMRQNEIYAYSA-QI---RTGDGCMVMPKIHWNSFEPSDWVSCTLEYVN 76

Query: 573 VAMELRDRLM 602
            A +++++ M
Sbjct: 77  KANQIKEKEM 86


>Z47073-2|CAA87373.1|  507|Caenorhabditis elegans Hypothetical
           protein ZC506.3 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 224 NSTDREVHHRTHGLRAI*LVIWHVQLPKGIFFLPR--FDRLAFWV 96
           N+TDR V+    G  A+ LV+  +  P G F  P   F R+ F V
Sbjct: 116 NATDRNVYDGLLGTLALFLVVSALAFPNGPFIRPHPVFWRIVFGV 160


>U51997-6|AAG24064.1|  159|Caenorhabditis elegans Hypothetical
           protein F19G12.1 protein.
          Length = 159

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 501 PGPCCPVSRPVFVWRGSQSPRSCSCWTEY 415
           P PCC V    +  RG + P+  SC   Y
Sbjct: 91  PRPCCAVCLDSYASRGPKKPKVFSCLHTY 119


>AF016662-5|AAB66059.2|  116|Caenorhabditis elegans Hypothetical
           protein C33C12.7 protein.
          Length = 116

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 434 VHVGLSTGASLPD-DEGEVTLAVELPADDVIAGLHDRV 324
           VH+ + T    P  D G +TL     A + IA  HDRV
Sbjct: 8   VHIAMETACGKPPKDMGIITLGDGYEASENIAAHHDRV 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,278,741
Number of Sequences: 27780
Number of extensions: 315571
Number of successful extensions: 925
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)