Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9h08
         (290 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   0.97 
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   1.7  
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    25   2.2  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    24   3.9  
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    23   9.1  

>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 26.2 bits (55), Expect = 0.97
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 151 NFVSLMSRSFCYVRSVVHENXPYLVSIPVSCHQLC---SNVILK*KLFL 288
           +F+ LM   + Y    +  N P + SIP    ++C    N++LK +LF+
Sbjct: 18  DFLYLMRCCYMYDTVSLVSNAPNIYSIPFFYDRICYDYKNILLKYELFI 66


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -2

Query: 139 IKTADSQIGKQXKINFNTSALVYFLTKRIRMSSSGH 32
           ++  D ++  Q  +++NT+  ++ L   I++  SGH
Sbjct: 279 VRQLDFRVKSQNHLSYNTTMKIFELIPSIKLVLSGH 314


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 41  ARHSDSFSKKIN*CTSVKVYFXLFANLT 124
           ARHSD + KKI+   S +    +F+N T
Sbjct: 86  ARHSDKYRKKISRSYSTEKDIEIFSNDT 113


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 172  YSLTTRNLFLKIKTADSQIGKQXKINFNTSALVYFLTKRIRMSS 41
            Y+  +  LF+ +KTA +   +   I      ++ F  KR  MSS
Sbjct: 966  YNHFSEPLFVTVKTASTDESRSVLIKPKADNVILFRLKRFIMSS 1009


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 253 ITDDTTPEWTQDTARSRGLHYARSKMI 173
           I DD +P+ TQ+ A+     Y   K++
Sbjct: 39  IIDDASPDGTQEVAKELQKIYGEDKIL 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,055,917
Number of Sequences: 5004
Number of extensions: 16679
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)