Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9h08
         (290 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0076 - 6365230-6365240,6365634-6365805,6365990-6366031,636...    26   4.4  
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869...    26   5.8  
04_01_0587 + 7654490-7655095,7655162-7655512,7655911-7656423           26   5.8  
02_03_0155 + 15805683-15805743,15805824-15806105,15808293-158089...    26   5.8  
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771...    26   5.8  

>05_02_0076 -
           6365230-6365240,6365634-6365805,6365990-6366031,
           6366274-6366373,6366468-6366529,6367069-6367150,
           6368041-6368072
          Length = 166

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 256 NITDDTTPEWTQDTAR-SRGLHYARSKMIYSLTTRNLFLKIKTADSQIGKQXKINFNTSA 80
           NIT     E  Q   R  +GL   R++    L   N++LK K A+S+ G Q  +N   SA
Sbjct: 65  NITTMNHRELKQLEGRLDKGLGKIRARKETELQNDNMYLKSKVAESERGLQ-TVNMMGSA 123


>05_07_0116 -
           27785083-27786123,27786201-27786278,27786364-27786976,
           27787128-27787213,27787316-27787438,27787600-27787734,
           27787930-27788019,27788796-27788981,27789560-27789661,
           27789787-27789900,27790010-27790153,27790260-27790325,
           27790895-27791056,27791668-27791916
          Length = 1062

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 167 INDTKFISQNQNRR*SNWQTXKNKL*H*CISLFS 66
           IND + IS++ + R +  QT  +KL   C+SL S
Sbjct: 545 INDKQKISRDYSGRIAELQTKSSKLEERCVSLSS 578


>04_01_0587 + 7654490-7655095,7655162-7655512,7655911-7656423
          Length = 489

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 181 CYVRSVVHENXPYLVSIPVSCHQLCSNVIL 270
           CY++ +++   P   +  V   + CSNVIL
Sbjct: 338 CYLKDILNNKRPLPTTEVVKLTEQCSNVIL 367


>02_03_0155 +
           15805683-15805743,15805824-15806105,15808293-15808959,
           15809440-15810490
          Length = 686

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 193 YARSKMIYSLTTRNLFLKIKTADSQIGKQXKINFNTSALVY--FLTKRIRMSSSGH 32
           YA +KM+Y   +++   K    +  + +   I +   AL+Y  ++T  ++ S   H
Sbjct: 56  YASTKMLYEALSQSPLTKCCIKERSLKRLAAILYGCGALIYTMYITPNLKKSKKFH 111


>02_03_0077 +
           14874273-14874571,14875304-14876150,14876878-14877147,
           14877313-14878065
          Length = 722

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 181 CYVRSVVHENXPYLVSIPVSCHQLCSNVIL 270
           CY++ +++   P   +  V   + CSNVIL
Sbjct: 135 CYLKDILNNKRPLPTTEMVKLTEQCSNVIL 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,952,544
Number of Sequences: 37544
Number of extensions: 84359
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)