Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9h08
         (290 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    29   0.56 
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    29   0.56 
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    25   6.8  
AL032656-4|CAB60309.2|  407|Caenorhabditis elegans Hypothetical ...    25   9.1  

>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
            F26A3.3 protein.
          Length = 1632

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 187  VRSVVHENXPYLVSIPVSC 243
            VRS++ EN P+++ +P +C
Sbjct: 1522 VRSIIRENEPFVIELPANC 1540


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
            polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 187  VRSVVHENXPYLVSIPVSC 243
            VRS++ EN P+++ +P +C
Sbjct: 1522 VRSIIRENEPFVIELPANC 1540


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
           protein W05B2.4 protein.
          Length = 2265

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 253 ITDDTTPEWTQDTARS 206
           ITDD+ P+W + TAR+
Sbjct: 812 ITDDSLPQWIEWTARA 827


>AL032656-4|CAB60309.2|  407|Caenorhabditis elegans Hypothetical
           protein Y106G6E.6 protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -2

Query: 244 DTTPEWTQDTARSRGLHYARSKMIYSLTTRNLFLKIKTADSQIGKQXKINFNTSALV 74
           D TP+    +  S  LH + SK +       L +    A +Q G    IN N   +V
Sbjct: 310 DWTPKLNNVSTPSGSLHTSESKDVKRTDRGELKVSQAAAHAQFGSTQVINSNAGEVV 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,765,975
Number of Sequences: 27780
Number of extensions: 92347
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)