Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9h08
         (290 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.33 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   4.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   7.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 0.33
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 190 ARSKMIYSLTTRNLFLKIKTADSQIGKQXKINFNTSALVYFLTKRIRMSSS 38
           AR  +   L T+ + L   T  +QIG++ K+    S  +    KRI++  S
Sbjct: 159 ARRDIHPELNTQGIALADLTQRAQIGQKHKLLIGPSIRITPAKKRIKLEQS 209


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 232 PVSCHQLCSNVILK 273
           P+S HQ+ +NV ++
Sbjct: 61  PISSHQIANNVTMQ 74


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 100 FLXVCQFDYL 129
           FL  C FDYL
Sbjct: 193 FLTSCSFDYL 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,487
Number of Sequences: 438
Number of extensions: 1049
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)