Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9h07
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   2.7  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   3.6  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   6.3  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    23   8.3  

>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 110 LNNIYY*CSKSKIKLFRHVGSTIYQSVEKEGILKI 214
           L +++  C+K K+K+ RH+     QSV+ + IL+I
Sbjct: 215 LEDLFTGCTK-KMKISRHIIDASGQSVKADRILEI 248


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 147 SNCFATWVQQFISQLKRKEY*KLIVGYVYENY 242
           SN  A +V QF   + +KE+  LI G   EN+
Sbjct: 441 SNGIADFVFQFYEDVGKKEFTLLIEGIKCENF 472


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 313 FFFKYFIVYSF*STPYHYIYFYYL 242
           F+F  F  +SF  T  H+ +F+ L
Sbjct: 112 FYFSLFSFFSFLFTSLHFNFFFRL 135


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +2

Query: 14  IAGLQDLGTMALPICLSKKMYNNLTLCLIRNILNNIY 124
           IA    L T+    C S+K+     LC+++ +   ++
Sbjct: 280 IASRISLRTIPTQSCFSEKLLKAANLCVVQQVKQKVF 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,251,930
Number of Sequences: 5004
Number of extensions: 23802
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)