Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9h07
         (314 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0440 - 10273032-10273259,10273423-10273461,10273875-102741...    28   1.8  
12_01_0788 + 7192937-7192994,7193074-7193160,7193242-7193307,719...    27   4.1  
09_04_0367 - 16978069-16978085,16978514-16978611,16979069-169792...    25   9.4  
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162...    25   9.4  
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315...    25   9.4  

>02_02_0440 -
           10273032-10273259,10273423-10273461,10273875-10274123,
           10274203-10274329,10275009-10275251,10275359-10275457,
           10275566-10275681,10275813-10276039,10276164-10276276,
           10276402-10276522,10276641-10276855,10277042-10277225,
           10277739-10278048,10278155-10278249,10278473-10278485
          Length = 792

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +2

Query: 20  GLQDLGTMALPICLSKKMYNNLTLCLIRNILNNIYY*CSKSKIKLFRHVGSTIYQSV 190
           G+Q+L    LP    +++ NN T     +I+ + YY  + S   L +H+   I++ V
Sbjct: 736 GMQELAQYLLPRVDDRRI-NNKTKQTFLSIVKSCYYAANCSPHMLDQHISEVIFEQV 791


>12_01_0788 +
           7192937-7192994,7193074-7193160,7193242-7193307,
           7193447-7193555,7194522-7194785,7194919-7195006,
           7195085-7195708,7196017-7196140,7196195-7196337,
           7196434-7196649,7196781-7196873,7196952-7197032,
           7197120-7197504,7197599-7197636
          Length = 791

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 129 NVANQKSNCFATWVQQFISQLKR 197
           N+AN++   FATW++Q +  L++
Sbjct: 208 NIANRQQQEFATWLRQRVIDLRK 230


>09_04_0367 -
           16978069-16978085,16978514-16978611,16979069-16979229,
           16979320-16979548,16979731-16980593
          Length = 455

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 86  SGYYTFFY*GKSGGPWSRGLED 21
           SG YTFF  GK  G W  G  D
Sbjct: 190 SGVYTFFGKGKYEGDWVDGKYD 211


>06_03_0510 -
           21615724-21615909,21615992-21616075,21616164-21616217,
           21616324-21616371,21616529-21616611,21616963-21617113,
           21617648-21617785,21617966-21618094,21618391-21618596,
           21618734-21618845,21619145-21619204,21619331-21619429,
           21619520-21619575,21620230-21620313,21621407-21621500
          Length = 527

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 19  GSSRPRDHGPPDLPQ 63
           GS +P D+GPP LP+
Sbjct: 148 GSGKPIDNGPPILPE 162


>01_06_0458 +
           29531069-29531126,29531247-29531302,29531407-29531505,
           29531989-29532048,29532285-29532396,29532459-29532694,
           29533092-29533220,29533325-29533462,29534043-29534193,
           29534394-29534476,29534658-29534705,29534828-29534881,
           29534971-29535054,29535152-29535337
          Length = 497

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 19  GSSRPRDHGPPDLPQ 63
           GS +P D+GPP LP+
Sbjct: 108 GSGKPIDNGPPILPE 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,203,340
Number of Sequences: 37544
Number of extensions: 120958
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)