Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9h05
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 50 4e-07
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 42 6e-05
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 39 8e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 33 0.051
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 29 0.63
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.83
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 28 1.1
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 27 2.5
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 5.8
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 25 7.7
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 49.6 bits (113), Expect = 4e-07
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = +1
Query: 571 FLKDFLAGGISAAISKTAVAPIERVKLILQVQ 666
F DF+ GG+SAA+SKTA APIERVKL++Q Q
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQ 58
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 42.3 bits (95), Expect = 6e-05
Identities = 17/32 (53%), Positives = 27/32 (84%)
Frame = +1
Query: 574 LKDFLAGGISAAISKTAVAPIERVKLILQVQH 669
L L+GG++A +S+TAV+P+ER+K+I QVQ+
Sbjct: 21 LISMLSGGVAATVSRTAVSPLERMKIIFQVQN 52
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 38.7 bits (86), Expect = 8e-04
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +1
Query: 562 SYGFL-KDFLAGGISAAISKTAVAPIERVKLILQVQHVS 675
S+ FL K +AGG + ++K+ VAP++RVK++ Q H S
Sbjct: 13 SWEFLVKSGIAGGTAGCVAKSVVAPLDRVKILYQTNHAS 51
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 32.7 bits (71), Expect = 0.051
Identities = 11/25 (44%), Positives = 21/25 (84%)
Frame = +1
Query: 583 FLAGGISAAISKTAVAPIERVKLIL 657
F++GGI+ +S+T AP++R+K++L
Sbjct: 131 FISGGIAGIVSRTCTAPLDRLKVML 155
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +1
Query: 574 LKDFLAGGISAAISKTAVAPIERVKLILQVQHVS 675
L +LAGG++ ++++ + P++ +K +Q +S
Sbjct: 229 LYSYLAGGMAGSVAQMFIYPVDTLKFRIQCSDLS 262
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 29.1 bits (62), Expect = 0.63
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 586 LAGGISAAISKTAVAPIERVKLILQVQHVS 675
LAGGIS+ I + +AP + +K+ +Q+ S
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS 50
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 28.7 bits (61), Expect = 0.83
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 574 LKDFLAGGISAAISKTAVAPIERVKLILQVQ 666
LKD +AGG + S VAP++ VK Q Q
Sbjct: 6 LKDAIAGGAAGLASSLVVAPLDVVKTRKQAQ 36
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 574 LKDFLAGGISAAISKTAVAPIERVKLILQ 660
L F+AGG++ + A AP++ VK LQ
Sbjct: 49 LSHFIAGGVAGMLGAIATAPLDVVKTRLQ 77
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 565 YGFLKDFLAGGISAAISKTAVA-PIERVKLILQVQ 666
+ F KDFLA G+S +++ V P + VK+ LQ Q
Sbjct: 15 FSFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQ 48
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 583 FLAGGISAAISKTAVAPIERVKLILQVQ 666
+++G IS + V P+E V++ LQ+Q
Sbjct: 116 YVSGAISGLANSFLVGPVEHVRIRLQIQ 143
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 449 HPTLLNPDINPWVISYWSVFRE 514
HP NPD P I +W RE
Sbjct: 348 HPAAWNPDNKPQSIVHWDSLRE 369
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 568 GFLKDFLAGGISAAISKTAVAPIERVKLILQVQ 666
G + FL+GG++A + T P E +K Q+Q
Sbjct: 22 GPVSGFLSGGLAACGAVTLTNPFEVIKTRFQLQ 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,234
Number of Sequences: 5004
Number of extensions: 50311
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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