Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9h03
         (238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomy...    25   1.8  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    23   7.1  

>SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 206

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 183 KXKKNMLXYHNELCVHRIXHYNGQXQYPVWMY 88
           K K + L    +LC  R+ +YN Q    +++Y
Sbjct: 34  KAKAHELSQEGKLCGERMENYNRQAASAIYLY 65


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 138 VHTIHCDKXTCF 173
           V T HCDK  CF
Sbjct: 51  VFTSHCDKKHCF 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,325
Number of Sequences: 5004
Number of extensions: 6567
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)