Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9h01
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    30   0.36 
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    27   3.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.9  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    25   7.8  

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
 Frame = +2

Query: 428 RSNRYYFFQLSASDYFL--FFFHLKPSSFIIRRKLHSEPLKCISSLKFSKSFYGTEFRCL 601
           +S+      LS  +YFL  FFF   PS  I     HS   K +S++ FSK  +      L
Sbjct: 247 KSHHQASIHLSQINYFLWFFFFFSFPSYIIKYLMSHSRRSKLLSAV-FSKKSFLIVSVLL 305

Query: 602 LCSYYDYI---FLLQIERNYPF 658
           L ++++ I   F+L   R+Y F
Sbjct: 306 LIAHFNTIFHPFILADNRHYLF 327


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 384 FFFVYNLLFFEDIRFVVIDITFFN 455
           F FVY+ L  ++ RF++  I +FN
Sbjct: 291 FIFVYSFLGHKEWRFIIYSIPWFN 314


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 431  SNRYYFFQLSASDYFLFFFH 490
            SNR +   LS +D+FL+F H
Sbjct: 1685 SNRDFIKMLSGNDFFLYFGH 1704


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 71  YDAE*IMFLHVSVPCANLPPLR 6
           Y A  + FL+ S+P A+LPPLR
Sbjct: 214 YPAIVVPFLNGSLPQADLPPLR 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,518
Number of Sequences: 5004
Number of extensions: 42149
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)