Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9h01
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.3  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -3

Query: 686 KRSGKKKVTGMDSFVQSVIKRCNHNNYITSSETPYRRKTSKILKKIYIL 540
           K   + K   + S + +  K  N+NNY   +   Y     K+  K YI+
Sbjct: 304 KERERSKEPKIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYII 352


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 202 KTRAVARSSFSRSEAGICN 258
           KTR + R S+   E+ ICN
Sbjct: 346 KTRIIGRRSWVTRESQICN 364


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 629 KRCNHNNYITSSETPYRRKTSKILKKIYILMA 534
           KR  HN      E P  ++   +L +I I++A
Sbjct: 359 KRPMHNVVYRPGENPVTQRLPAVLSRIGIILA 390


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 629 KRCNHNNYITSSETPYRRKTSKILKKIY 546
           K  N+NNY  +    Y    +   KK+Y
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLY 117


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 629 KRCNHNNYITSSETPYRRKTSKILKKIY 546
           K  N+NNY  +    Y    +   KK+Y
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLY 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,629
Number of Sequences: 438
Number of extensions: 3113
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)