Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9g20
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          25   0.59 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.6  

>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 354 F*NNVSFDIFE*DFQPSIEEVLT 286
           F  NVSFDI + DF PS    +T
Sbjct: 12  FEENVSFDIDDPDFAPSKNTTIT 34



 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 426 WTKLCVIVLRK 458
           W+K+C++V RK
Sbjct: 53  WSKVCIVVRRK 63


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 236  ALARKEAPLRVKYIKQNVNTSSIDG*KSHSKMSKLTL 346
            ++  K +PL     K+N+NT ++DG  S  K    TL
Sbjct: 1211 SIESKSSPL---VYKRNINTYTLDGVGSVEKTGVSTL 1244


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 187  SQKQQYTNQQIGVPFQC 237
            SQK   T +++ VPF C
Sbjct: 1752 SQKPVSTTEELTVPFVC 1768


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,518
Number of Sequences: 438
Number of extensions: 3166
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)