Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9g19
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    26   4.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   5.7  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   5.7  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   7.5  

>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 290 ECRSPVASTSRDDVDSAQQLYATLNEYLLLEQKSQ 394
           E +S VAS S+D+V S+  L  + +  LL +Q ++
Sbjct: 148 EQKSSVASASKDNVSSSSILQGSASSKLLPDQSAR 182


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 1/151 (0%)
 Frame = -2

Query: 549  SETCRTD*WPPMST-SAGRSNQTLRQRNTCAAPSLAPVVTSPLSDSAGKRSFG*DFCSRS 373
            S T  T   P  S  S+  S+ T    +     S+AP VTS  S+++     G D  + S
Sbjct: 867  STTALTSQGPSSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSS 926

Query: 372  RYSLSVAYSCWAESTSSRDVDATGERHSAASGCLAPALNMIGTVGASGG*IGT*ACAEQA 193
             ++   + S    S ++  V  T    SA+S   +  ++      A+G    + A A  +
Sbjct: 927  SWTAETSSSAITSSVAA-SVTPTSS-SSASSWSSSSEVDPSTAASATGSSTSSIATASVS 984

Query: 192  AANVVVYARADPPSARRPDDLRTGREGPSTS 100
             ++    A A    +           G STS
Sbjct: 985  GSSTSSVATASATDSSTSSIAAASVTGSSTS 1015


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 20/88 (22%), Positives = 39/88 (44%)
 Frame = +2

Query: 293 CRSPVASTSRDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVL 472
           CR P    + +D  +  +  A +NE L LE+     + L  +  +G+ +  AR      +
Sbjct: 225 CRDPYPYETAEDCMADAKTTAFVNELLQLEEPD--FVLLTGDLINGDTSRDARSSLMKAV 282

Query: 473 RCLKVWFDLPADVLIGGHQSVRQVSDQD 556
               V +++P  V  G H  +  +S ++
Sbjct: 283 SPF-VDYNVPFAVNFGNHDDLGDLSREE 309


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 210 ACAEQAAANVVVYARADPPSARRPDDLRTGREGP 109
           AC       V+ + + D P A++P DLRT    P
Sbjct: 120 ACGFDLNTRVLAF-KLDAPEAKKPVDLRTQHNRP 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,851
Number of Sequences: 5004
Number of extensions: 31768
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)