Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9g19
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991... 32 0.27
11_01_0106 - 792190-792730,793905-794018,794206-794540 29 1.9
05_05_0007 - 21465506-21466273 29 2.5
01_04_0095 + 15979884-15980234 29 2.5
10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977 29 3.3
09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579... 28 4.4
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 28 4.4
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 28 4.4
07_03_0225 - 15390364-15390924,15391231-15391288,15392160-153922... 28 5.8
05_05_0284 + 23851033-23851279,23851514-23851827 28 5.8
03_05_0935 - 28948368-28948769,28949028-28949120,28949240-289493... 28 5.8
01_06_1477 + 37645143-37647425 28 5.8
12_02_1126 + 26331879-26332013,26332132-26332476 27 7.7
06_03_0744 - 24098670-24098951 27 7.7
02_05_0073 - 25602268-25603182,25603273-25604190 27 7.7
01_06_1239 + 35652053-35654050 27 7.7
>12_02_0692 - 22197582-22198214,22198761-22198935,22199089-22199185,
22199359-22199473,22199546-22199633,22199972-22200063,
22200138-22200629,22201025-22201048,22201348-22203489
Length = 1285
Score = 32.3 bits (70), Expect = 0.27
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +2
Query: 110 GPS--RPVLKSSGRRAEGGSARAYTTTLAAACSAHA*V-PIHPPLAPTVPIMLRAGARHP 280
GPS P + G+RA GSARA ++ + + P++ P V ML G+R P
Sbjct: 1208 GPSGASPAVNGGGKRAADGSARATARSVLKEVNRNTPTPPLNSMSVPKVRSMLGVGSRRP 1267
Query: 281 DAAECRSPVASTSRDD 328
E + DD
Sbjct: 1268 AVLESVRRLEPFGSDD 1283
>11_01_0106 - 792190-792730,793905-794018,794206-794540
Length = 329
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2
Query: 131 KSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTV-PIMLRAGARHPDAAECRSPV 307
K + +R GG A YT A S H I P L P + +R H A SP
Sbjct: 166 KKTVQRNGGGGAAGYT---VAYISEHTCKSIEPSLPPVILDTTVRTTNNHQQPAAAESPA 222
Query: 308 ASTS 319
A++S
Sbjct: 223 ATSS 226
>05_05_0007 - 21465506-21466273
Length = 255
Score = 29.1 bits (62), Expect = 2.5
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +2
Query: 227 PPLAPTVPIMLRAGARHPDAAECRSPVASTSRDDVDSAQQLYATLNEYLLLEQKSQPKLR 406
PP A T P + +HP A RSP A+++ + ++ E ++
Sbjct: 26 PPPAATPPAWMWPSCKHPRAHSFRSPSAASAAAAAKTIASIFLDSGESSFANSSARMHHD 85
Query: 407 LPAESESGE--VTTGARDGAAHVLRCLK 484
++S S E V+ A D A ++R L+
Sbjct: 86 CASDSLSTESDVSATAEDMADAIVRGLR 113
>01_04_0095 + 15979884-15980234
Length = 116
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 184 CRCICPCRSPLCSTTRRLEDRAR 116
CRC CP SP+ S R RAR
Sbjct: 30 CRCPCPGASPMASPCCRTRSRAR 52
>10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977
Length = 614
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -1
Query: 283 IRVPRARSQHDRDGWRERRVNRHLSVRRASSG*CRCICPCRSPL 152
+RV A RDGW V RH +V+ G R +C CRSPL
Sbjct: 460 VRVIDADHGSGRDGWFSIEVARH-TVKDEIVGLRRHVC-CRSPL 501
>09_02_0207 -
5793848-5794276,5794523-5794645,5794742-5795250,
5795543-5795648,5795798-5795959,5796094-5796144,
5796229-5796394,5796624-5797093
Length = 671
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 254 MLRAGARHPDAAECRSPVASTSRDDVDSAQQLYATLNEYLLLE-QKSQP 397
+L R P+ + SP+ S +D + S+ ++ +NE L LE QK P
Sbjct: 253 ILNGNYRIPELPKYSSPITSLIKDMLQSSPDVWFRVNELLPLELQKDLP 301
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 401 LRLPAESESGEVTTGARDGAAHVLRCLKVWFDLPADVLI 517
LR+P ++ + VT GA A+ + W D+P V++
Sbjct: 310 LRIPTQTANRRVTNGAHQRASQQYSYNRFWQDIPILVMV 348
>03_02_0955 -
12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 176 TTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAA 289
+ + AAA +A+ P P PT +LR +R P AA
Sbjct: 2 SASAAAAAAAYGTPPSQQPPPPTAESVLRVASRDPSAA 39
>07_03_0225 -
15390364-15390924,15391231-15391288,15392160-15392238,
15392354-15393167
Length = 503
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 377 LEQKSQPKLR-LPAESESGEVTTGARDGAAHVLRCLKVWFDLPADVLIGGHQSVRQVSD 550
LE K KLR LP + + R AH L+ +K +L + I G S+ +SD
Sbjct: 325 LELKDCSKLRALPEQLKHAPKMQRLRIQGAHALKKIKNLHELSGSLRINGSHSLASISD 383
>05_05_0284 + 23851033-23851279,23851514-23851827
Length = 186
Score = 27.9 bits (59), Expect = 5.8
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = +2
Query: 131 KSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAAECRSPVA 310
+S+G A S A AAA S A + PPL + R + PD +C
Sbjct: 35 RSAGLAAAAASRAARLA--AAAASRAARLKPRPPLDDAARLSFRYSSEPPDDGKC----- 87
Query: 311 STSRDDVDSAQQLYATLNEY 370
+++D++S + ++A Y
Sbjct: 88 -VTKEDLESDEAVWALFERY 106
>03_05_0935 -
28948368-28948769,28949028-28949120,28949240-28949329,
28949413-28949477,28950442-28950512,28950610-28950648,
28950832-28951250
Length = 392
Score = 27.9 bits (59), Expect = 5.8
Identities = 21/63 (33%), Positives = 26/63 (41%)
Frame = -2
Query: 303 GERHSAASGCLAPALNMIGTVGASGG*IGT*ACAEQAAANVVVYARADPPSARRPDDLRT 124
G R AA+ A A + + ASGG G A + A + A SARR R
Sbjct: 45 GARPGAAAAAAAAAADAVAASVASGGKKGKAAVVLRVPAGSPIVAARRQASARREIAARR 104
Query: 123 GRE 115
RE
Sbjct: 105 ARE 107
>01_06_1477 + 37645143-37647425
Length = 760
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 337 GPATVRYAQRVPAPRAKVSAETAL 408
GPA +RY QR AP AK++ L
Sbjct: 446 GPAILRYIQRSGAPTAKIAFRATL 469
>12_02_1126 + 26331879-26332013,26332132-26332476
Length = 159
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 197 CSAHA*VPIHPPLAPTVPIMLRAGARHPDAAE 292
C A P+HPP P P AGA P E
Sbjct: 91 CEAVLVRPVHPPKPPPAPTDAGAGAAAPPVKE 122
>06_03_0744 - 24098670-24098951
Length = 93
Score = 27.5 bits (58), Expect = 7.7
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = -2
Query: 363 LSVAYSCWAESTSSRDVDATGERHSAASGCLAPALNMIGTVGASGG*IGT*ACAEQAAAN 184
L++A++ A + + + +A G +AA APA G A+GG A A +AA
Sbjct: 13 LAIAFAASATAVLASESEAGGAAAAAAEPT-APAPGAGGEAAAAGGAAAGGAAAATSAAA 71
Query: 183 VVVYARADPPSA 148
VV A PP A
Sbjct: 72 VVA---AAPPLA 80
>02_05_0073 - 25602268-25603182,25603273-25604190
Length = 610
Score = 27.5 bits (58), Expect = 7.7
Identities = 39/127 (30%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Frame = +2
Query: 110 GPSRPVLKSSGRRAEGGS-ARAYTTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDA 286
G SR +S GRRAEG S A A + V P +VP +A A P A
Sbjct: 179 GGSRRASRSPGRRAEGVSPAPAPAGSGGGGGGGERVVRQQPGKMVSVPAREKARAPSPAA 238
Query: 287 A---ECRSPVASTSRDDV----DSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTG 445
A C SP +S+ V ++A T + L + S P R P +E E +
Sbjct: 239 ASGKRCASPRSSSPARMVAAGNENAGGGQMTAAQTPSLSRSSSPYRRSPM-AEIDENSLR 297
Query: 446 ARDGAAH 466
+GA H
Sbjct: 298 NNNGANH 304
>01_06_1239 + 35652053-35654050
Length = 665
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 538 SNRLMAPDEHVRG*IEPDFETAQHVRCAIPSAGRHFAALRL 416
+NRL+ D G + PD E+ + A+ GRH AA+ L
Sbjct: 253 ANRLLLHDMPSDG-VAPDAESYSPILAALARRGRHLAAVSL 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,059,564
Number of Sequences: 37544
Number of extensions: 286714
Number of successful extensions: 1178
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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