Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9g19
(559 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89293-1|AAB72039.1| 936|Homo sapiens MSH4 protein. 32 1.2
BC113608-1|AAI13609.1| 522|Homo sapiens chromosome 6 open readi... 31 2.1
BC113606-1|AAI13607.1| 522|Homo sapiens chromosome 6 open readi... 31 2.1
BC108714-1|AAI08715.1| 522|Homo sapiens chromosome 6 open readi... 31 2.1
BC012928-1|AAH12928.1| 473|Homo sapiens C6orf150 protein protein. 31 2.1
AL603910-3|CAI14879.1| 447|Homo sapiens chromosome 6 open readi... 31 2.1
AL603910-2|CAI14878.1| 522|Homo sapiens chromosome 6 open readi... 31 2.1
AL603910-1|CAO03612.1| 505|Homo sapiens chromosome 6 open readi... 31 2.1
AK097148-1|BAC04965.1| 522|Homo sapiens protein ( Homo sapiens ... 31 2.1
BC025315-1|AAH25315.1| 654|Homo sapiens WD repeat domain 70 pro... 30 4.8
BC009648-1|AAH09648.1| 654|Homo sapiens WD repeat domain 70 pro... 30 4.8
AL512685-1|CAC21644.1| 674|Homo sapiens hypothetical protein pr... 30 4.8
AK001095-1|BAA91502.1| 654|Homo sapiens protein ( Homo sapiens ... 30 4.8
BC031673-1|AAH31673.1| 271|Homo sapiens hypothetical gene suppo... 29 8.4
BC011934-1|AAH11934.1| 227|Homo sapiens sperm associated antige... 29 8.4
>U89293-1|AAB72039.1| 936|Homo sapiens MSH4 protein.
Length = 936
Score = 32.3 bits (70), Expect = 1.2
Identities = 32/106 (30%), Positives = 47/106 (44%)
Frame = -2
Query: 462 AAPSLAPVVTSPLSDSAGKRSFG*DFCSRSRYSLSVAYSCWAESTSSRDVDATGERHSAA 283
+AP+++PVV S + +FG +SR S+ V + TS A G+R S++
Sbjct: 12 SAPAVSPVVGETRSPQGPRYNFGLQETPQSRPSVQVVSASTCPGTSG----AAGDRSSSS 67
Query: 282 SGCLAPALNMIGTVGASGG*IGT*ACAEQAAANVVVYARADPPSAR 145
S PA N G+ G A AE A+ + A SAR
Sbjct: 68 SSLPCPAPNSRPAQGSYFG--NKRAYAENTVASNFTFG-ASSSSAR 110
>BC113608-1|AAI13609.1| 522|Homo sapiens chromosome 6 open reading
frame 150 protein.
Length = 522
Score = 31.5 bits (68), Expect = 2.1
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 119 RPVLKSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAAEC 295
RP ++++G RA+ RA T + A SA + PP A P + RAG+ A C
Sbjct: 71 RPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPP-AAREPALSRAGSCRQRGARC 128
>BC113606-1|AAI13607.1| 522|Homo sapiens chromosome 6 open reading
frame 150 protein.
Length = 522
Score = 31.5 bits (68), Expect = 2.1
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 119 RPVLKSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAAEC 295
RP ++++G RA+ RA T + A SA + PP A P + RAG+ A C
Sbjct: 71 RPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPP-AAREPALSRAGSCRQRGARC 128
>BC108714-1|AAI08715.1| 522|Homo sapiens chromosome 6 open reading
frame 150 protein.
Length = 522
Score = 31.5 bits (68), Expect = 2.1
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 119 RPVLKSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAAEC 295
RP ++++G RA+ RA T + A SA + PP A P + RAG+ A C
Sbjct: 71 RPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPP-AAREPALSRAGSCRQRGARC 128
>BC012928-1|AAH12928.1| 473|Homo sapiens C6orf150 protein protein.
Length = 473
Score = 31.5 bits (68), Expect = 2.1
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 119 RPVLKSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAAEC 295
RP ++++G RA+ RA T + A SA + PP A P + RAG+ A C
Sbjct: 97 RPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPP-AAREPALSRAGSCRQRGARC 154
>AL603910-3|CAI14879.1| 447|Homo sapiens chromosome 6 open reading
frame 150 protein.
Length = 447
Score = 31.5 bits (68), Expect = 2.1
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 119 RPVLKSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAAEC 295
RP ++++G RA+ RA T + A SA + PP A P + RAG+ A C
Sbjct: 71 RPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPP-AAREPALSRAGSCRQRGARC 128
>AL603910-2|CAI14878.1| 522|Homo sapiens chromosome 6 open reading
frame 150 protein.
Length = 522
Score = 31.5 bits (68), Expect = 2.1
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 119 RPVLKSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAAEC 295
RP ++++G RA+ RA T + A SA + PP A P + RAG+ A C
Sbjct: 71 RPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPP-AAREPALSRAGSCRQRGARC 128
>AL603910-1|CAO03612.1| 505|Homo sapiens chromosome 6 open reading
frame 150 protein.
Length = 505
Score = 31.5 bits (68), Expect = 2.1
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 119 RPVLKSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAAEC 295
RP ++++G RA+ RA T + A SA + PP A P + RAG+ A C
Sbjct: 71 RPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPP-AAREPALSRAGSCRQRGARC 128
>AK097148-1|BAC04965.1| 522|Homo sapiens protein ( Homo sapiens
cDNA FLJ39829 fis, clone SPLEN2012800. ).
Length = 522
Score = 31.5 bits (68), Expect = 2.1
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 119 RPVLKSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAAEC 295
RP ++++G RA+ RA T + A SA + PP A P + RAG+ A C
Sbjct: 71 RPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPP-AAREPALSRAGSCRQRGARC 128
>BC025315-1|AAH25315.1| 654|Homo sapiens WD repeat domain 70
protein.
Length = 654
Score = 30.3 bits (65), Expect = 4.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 465 TCCAVSKSGSIYPRTCSSGAINLFDRFLT 551
T C S+ G++ C +G+I ++DR LT
Sbjct: 336 TTCTYSRDGNLIAAACQNGSIQIWDRNLT 364
>BC009648-1|AAH09648.1| 654|Homo sapiens WD repeat domain 70
protein.
Length = 654
Score = 30.3 bits (65), Expect = 4.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 465 TCCAVSKSGSIYPRTCSSGAINLFDRFLT 551
T C S+ G++ C +G+I ++DR LT
Sbjct: 336 TTCTYSRDGNLIAAACQNGSIQIWDRNLT 364
>AL512685-1|CAC21644.1| 674|Homo sapiens hypothetical protein
protein.
Length = 674
Score = 30.3 bits (65), Expect = 4.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 465 TCCAVSKSGSIYPRTCSSGAINLFDRFLT 551
T C S+ G++ C +G+I ++DR LT
Sbjct: 356 TTCTYSRDGNLIAAACQNGSIQIWDRNLT 384
>AK001095-1|BAA91502.1| 654|Homo sapiens protein ( Homo sapiens
cDNA FLJ10233 fis, clone HEMBB1000266. ).
Length = 654
Score = 30.3 bits (65), Expect = 4.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 465 TCCAVSKSGSIYPRTCSSGAINLFDRFLT 551
T C S+ G++ C +G+I ++DR LT
Sbjct: 336 TTCTYSRDGNLIAAACQNGSIQIWDRNLT 364
>BC031673-1|AAH31673.1| 271|Homo sapiens hypothetical gene
supported by BC031673 protein.
Length = 271
Score = 29.5 bits (63), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 222 IGT*ACAEQAAA--NVVVYARADPPSARRPDDLRTGREGPS 106
+G+ +C+ + AA A PP+ARRP GR GP+
Sbjct: 217 LGSRSCSRRGAAAGTDTTQAHTAPPAARRPAPSGAGRPGPA 257
>BC011934-1|AAH11934.1| 227|Homo sapiens sperm associated antigen 7
protein.
Length = 227
Score = 29.5 bits (63), Expect = 8.4
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -2
Query: 537 RTD*WPPMSTSAGRSNQTLRQRNTCAAPSLAPVVTSPLSDSAGKRS 400
R + W P R + L QR A PVV SP SD K S
Sbjct: 123 RGEEWDPQKAEEKRKLKELAQRQEEEAAQQGPVVVSPASDYKDKYS 168
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,998,807
Number of Sequences: 237096
Number of extensions: 1380069
Number of successful extensions: 4343
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4343
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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