Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9g18
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 69 7e-13
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 56 4e-09
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 50 4e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 4e-06
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 43 3e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 43 3e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 43 3e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 42 5e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 42 7e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 3e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 4e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 7e-04
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 38 0.001
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 37 0.002
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 37 0.003
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 36 0.004
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 34 0.014
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 34 0.014
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.033
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.033
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.10
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.53
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.2
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 28 1.2
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 28 1.2
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 28 1.2
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 1.6
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 2.2
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 27 2.2
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 26 3.8
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 26 3.8
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 3.8
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 5.0
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 5.0
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 8.7
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 25 8.7
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 8.7
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 68.5 bits (160), Expect = 7e-13
Identities = 32/72 (44%), Positives = 46/72 (63%)
Frame = +3
Query: 396 PNHTIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEKA 575
P + +F+ +LNP T E +E FS+F KII C+++RD TG S QYAF+E++ +EKA
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
Query: 576 LREMHLEYIDGS 611
+M ID S
Sbjct: 302 YFKMQNVLIDDS 313
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 56.0 bits (129), Expect = 4e-09
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +3
Query: 324 EPHDRAILRAIYSEYIPN--KRVKGNPNHTIFIGRLNPRTPQETIESEFSKFDKIIHCRL 497
+ R LR++ + P+ + V G+P T+F+ RL+ T + IE EF+++ I R+
Sbjct: 72 QKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRV 131
Query: 498 VRDLVTGKSKQYAFVEYEK 554
VR+ VTGKS YAFV +E+
Sbjct: 132 VRNKVTGKSMGYAFVVFER 150
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 49.6 bits (113), Expect = 4e-07
Identities = 19/67 (28%), Positives = 41/67 (61%)
Frame = +3
Query: 408 IFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEKALREM 587
+FIG LN T +++ F +F +++ C ++RD TG+S+ + F+ ++ C+ + + +
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKE 224
Query: 588 HLEYIDG 608
H ++DG
Sbjct: 225 H--HLDG 229
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +3
Query: 408 IFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEKALREM 587
+F+G + +E + F++F +++ L+ D TG+ + + FV YE S +E + +
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQP 308
Query: 588 HL 593
++
Sbjct: 309 YI 310
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 46.0 bits (104), Expect = 4e-06
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = +3
Query: 393 NPNHTIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEK 572
N T+F+GRL+ + + EF ++ I+ R++ D +G+SK Y +V++E +
Sbjct: 260 NETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKA 319
Query: 573 ALREMHLEYIDG 608
A+ + IDG
Sbjct: 320 AVAANGTKEIDG 331
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 43.2 bits (97), Expect = 3e-05
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 408 IFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEKALREM 587
+++GRL ++ + FS+F ++ R+ R+ TG SK YAF+E+E M
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 588 H 590
H
Sbjct: 167 H 167
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 43.2 bits (97), Expect = 3e-05
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = +3
Query: 369 IPNKRVKGNPNHT---IFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAF 539
+ +KR KG N +F+G L + ET++ F + ++ R+ D +G+ K YAF
Sbjct: 78 LKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAF 137
Query: 540 VEY--EKYSCMEKALREMHLEY 599
VE+ K + KAL+ H Y
Sbjct: 138 VEFINPKTDVISKALKFHHTIY 159
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 43.2 bits (97), Expect = 3e-05
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = +3
Query: 348 RAIYSEYIPNKRVKGNPNHTIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSK 527
R ++S+ P+ R G N +FI L+P + + FS F KI+ C++ D + G +K
Sbjct: 152 RIMWSQRDPSLRKMGTGN--VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL-GNAK 208
Query: 528 QYAFVEYEKYSCMEKALREMH 590
Y FV ++ A+ ++
Sbjct: 209 GYGFVHFDSVESANAAIEHVN 229
Score = 41.9 bits (94), Expect = 7e-05
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +3
Query: 405 TIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEKALRE 584
++++G L+P + + F+ + R+ RD VT +S YA+V + EKAL E
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 585 MHLEYIDG 608
++ I G
Sbjct: 141 LNYTLIKG 148
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +3
Query: 408 IFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEKALREM 587
+FI L E +++EFS F I +++ D GKSK + FV Y KA+ EM
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 588 HLEYIDG 608
+ + G
Sbjct: 425 NQRMLAG 431
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 42.3 bits (95), Expect = 5e-05
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +3
Query: 393 NPNH-TIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCME 569
+PNH +F+G L E++ FS++ ++ ++VRD GK++ + FV ++
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFL 84
Query: 570 KALREMHLEYI 602
KA RE + +YI
Sbjct: 85 KAWREKNGKYI 95
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 41.9 bits (94), Expect = 7e-05
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = +3
Query: 408 IFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYE 551
I+IG L+ ++ I FS+F + + LVRD TGKSK +AF++YE
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYE 80
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +3
Query: 408 IFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEKALREM 587
+F+G L+P + + FS +++ V G+SK Y FV Y+ + + A+ M
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 588 HLEYI 602
+ +++
Sbjct: 161 NNQFL 165
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.5 bits (88), Expect = 4e-04
Identities = 20/72 (27%), Positives = 38/72 (52%)
Frame = +3
Query: 393 NPNHTIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEK 572
N N T+F+ L +T Q+ + + FS I H +V + TG+++ Y FV + ++
Sbjct: 2 NSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
Query: 573 ALREMHLEYIDG 608
A +E+ + + G
Sbjct: 62 AAKELKNKKLHG 73
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 405 TIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVE--YEK--YSCMEK 572
T+F+ L ++ + + F +F + + +LV+D T +S F++ YEK +C+E
Sbjct: 278 TVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEM 337
Query: 573 A 575
A
Sbjct: 338 A 338
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.7 bits (86), Expect = 7e-04
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 375 NKRVKGNPNHTIFIGRLNPRTPQETIESEF-SKFDKIIHCRLVRDLVTGKSKQYAFVEYE 551
N V +P +IF+G L P T + F S + +++ D VTG S++Y FV +
Sbjct: 173 NNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFS 232
Query: 552 KYSCMEKALREM 587
+ AL M
Sbjct: 233 SEKEQQHALMHM 244
Score = 29.1 bits (62), Expect = 0.53
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 399 NHTIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEKAL 578
N T+F+G L ++ ++ F F +I++ ++ K FV+Y + S EKA+
Sbjct: 296 NTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPF------GKGCGFVQYSEKSAAEKAI 349
Query: 579 REM 587
M
Sbjct: 350 NTM 352
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Frame = +3
Query: 384 VKGNPNHTIFIGRLNPRTPQE----TIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYE 551
V+G P +F+ LN +E T++ F ++ ++H ++++D + + Y+FV+++
Sbjct: 73 VRGKPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWL---QRPYSFVQFQ 129
Query: 552 KYSCMEKALREMHLEYIDG 608
KAL E +DG
Sbjct: 130 NTDDASKALSEAQNTILDG 148
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 402 HTIFIGRLNP-RTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYE 551
++IF+G+L+P + FSK+ K+I C+++ K +AF+ ++
Sbjct: 365 YSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQ---SKKPAFAFLRFD 412
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +3
Query: 372 PNKRVKGNPN--HTIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVE 545
P +G+ N + +F+ + R ++ ++ FSKF + H R++R+ VT S+ + F+
Sbjct: 89 PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLS 148
Query: 546 Y 548
+
Sbjct: 149 F 149
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 405 TIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEKA 575
T+ + L+ T +E + F +F I L +D TG++K +AFV Y C KA
Sbjct: 203 TLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKA 259
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 387 KGNPNHTIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCM 566
K P+ +F+G L+ T ++ F + +I RL+ TGK K + FV++
Sbjct: 223 KKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTC 282
Query: 567 EKALREMH 590
KA+ H
Sbjct: 283 MKAMELGH 290
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.014
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = +3
Query: 318 DVEPHDRAILRAIYSEYIPNKRVKGNPNHTIFIGRLNPRTPQETIESEFSKFDKIIHCRL 497
D H+R R+ E + T+F+ +L R + F + + ++
Sbjct: 212 DDRSHERKRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQI 271
Query: 498 VRDLVTGKSKQYAFVEY 548
VRD ++G+SK A+VE+
Sbjct: 272 VRDKISGRSKGVAYVEF 288
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.3 bits (75), Expect = 0.014
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 405 TIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEY 548
T+++G L P + I+ ++ K + +L+R+ TG + Y FVE+
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEF 141
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 33.1 bits (72), Expect = 0.033
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 408 IFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEKAL 578
+F+G L +E + F I + R+VRD T K +A+++++ ++KAL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 33.1 bits (72), Expect = 0.033
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +3
Query: 393 NPNHTIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEK 572
NP+ +++G + +E + F + + +LV D +G+ K Y F EY +
Sbjct: 2 NPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAAS 61
Query: 573 ALREMH 590
A+R ++
Sbjct: 62 AVRNLN 67
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 31.5 bits (68), Expect = 0.10
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 405 TIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEKALRE 584
T+ +G L P + + + F F +II L R + YAFVE+++ ++A+
Sbjct: 7 TVHVGNLAPSVTESLLYNAFIPFGEIISVALHRK-EKAVDRSYAFVEFDEPEDAKEAMEN 65
Query: 585 MH 590
M+
Sbjct: 66 MN 67
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.53
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 459 EFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEKALREMH 590
EF F +I C + T S+ +AFVEYE E A E+H
Sbjct: 26 EFEPFGPLIRCDIPIPR-TRTSRPFAFVEYEDSRDAEDAYYEVH 68
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +3
Query: 396 PNHTIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEKA 575
P TI + L +E I F + I H + + +K Y ++EY + A
Sbjct: 97 PLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANA 156
Query: 576 LREMHLEYIDGSE 614
+ +M+ +DG E
Sbjct: 157 VDKMNNAELDGEE 169
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -2
Query: 338 SIMRLYVCTINRTNFYWIVFCGIFFKICFAVLGHFLLLYQSKMK 207
SI + + + + + +W +F ++ +++ F+L YQSK K
Sbjct: 392 SIFIILLSSNSHYSQFWAIFQAFVWRFLHSIIHAFILFYQSKSK 435
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +3
Query: 402 HTIFIGRLNPRTPQETIESEFSKF---DKIIHCRLVRDLVTGKSKQYAFVEYEKY 557
HT+ R N + P+ +E SK D ++H V D TGK+ + + V Y
Sbjct: 46 HTVDFIRENEKDPERLVEVVDSKIYDNDGLVHEVCVSDKATGKANKRSIVYMHGY 100
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 408 IFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEK 554
++I L P T E + ++F K+ + + D+ T K Y F +E+
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEE 346
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +3
Query: 408 IFIGRLNPRTPQETIESEFSKFDKIIHCRLV 500
+F+GR+ P+ +E + F + +I+ C+L+
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM 36
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 444 ETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEY 548
+ +E FSKF +I C L T SK Y FV +
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +3
Query: 384 VKGNPNHTIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSC 563
+ P T +G L+ + + F + + RLV D +T +S+ + +VE+E
Sbjct: 88 IPSEPPFTAHVGNLSFDLTENDLGDFFG--EGVTSIRLVIDPLTERSRGFGYVEFETADT 145
Query: 564 MEKAL 578
+ AL
Sbjct: 146 LSAAL 150
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 386 YPFIGDVFRVNST*YCSIMRLYVCTINRTNFYWIVFCGIF 267
Y F+ F+ N R + ++ YW+ FCGIF
Sbjct: 216 YRFLNHKFKHNLNPLTCTGRFIIGYVSTFAAYWLGFCGIF 255
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 399 NHTIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEY 548
++ +++G L+ T +E I + FSK +I + D T + FVEY
Sbjct: 31 SNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/48 (20%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 408 IFIGRLNPRTPQETIESEFSKFDKIIHCRLV-RDLVTGKSKQYAFVEY 548
I++G L+ +ES FS+F + + ++ + G +++A++ +
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 444 ETIESEFSKFDKIIHCRLVRDLVT---GKSKQYAFVEYEKYSCMEKALREM 587
E+++++FS + +I ++ R + T G FV Y E A+ EM
Sbjct: 442 ESVKTQFSNYGPLIDIKIPRSIGTRNSGLGTGKVFVRYSDIRSAEVAMEEM 492
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +3
Query: 516 GKSKQYAFVEYEKYSCMEKALREMHLEYIDGS 611
G S+++AF+ ++ +KA+R ++ Y++ S
Sbjct: 43 GVSRRFAFIGFKNEEDADKAIRYLNKSYVETS 74
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 405 TIFIGRLNPRTPQETIESEFSKFDKI 482
TI++G ++ R E I FSK+ ++
Sbjct: 18 TIYVGNIDSRLSDEEIIKHFSKYGQV 43
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 25.0 bits (52), Expect = 8.7
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +3
Query: 393 NPNHTIFIGRLNPRTPQETIESEFSKFDKIIHCRLVRDLVTGKSKQYAFVEYEKYSCMEK 572
+P +TI++G L+ ++ + FSK +K R + + G S FVE+E+ K
Sbjct: 599 SPCNTIYVGNLSNPDQEKKLRLAFSK-EK--GYRRLCFKIKGNSPM-CFVEFEEVCHAAK 654
Query: 573 ALREMHLEYID 605
A+ +M +D
Sbjct: 655 AMEKMQGAALD 665
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 8.7
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +3
Query: 408 IFIGRLNPRTPQETIESEFSKFDKI----IHCRLVRDLVTGKSKQYAFVEYEKYSCMEKA 575
+F+GRL+ T + I S F + I R VR AFV + ++KA
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKA 105
Query: 576 LREMHLEYIDGSE 614
+ ++ + +D E
Sbjct: 106 IETLNGKTLDDRE 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,450
Number of Sequences: 5004
Number of extensions: 48530
Number of successful extensions: 152
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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