Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9g10
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    28   1.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.8  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   2.8  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    26   4.8  
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    26   4.8  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   4.8  

>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 550 LSCLNMDALVRYAVHGIRSIFLQHHISKASMWCD 651
           L   ++D  +R  +H +  + L +H+   + WCD
Sbjct: 73  LKITSVDRKIRLQIHQLHLLCLTYHLCTRNTWCD 106



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 572 ASMLRQLNIQTRLSTICFKRIFEFFGHIARKSGDNVM*LWS 450
           AS+LR LN+ TRL        F F G I   S   ++  WS
Sbjct: 204 ASILRNLNVPTRLVFSLQVLSFRFKGAINEASSHEIVPAWS 244


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 28  IKINILLVCLEPLLFKHLKNESSIIKGGN 114
           IK+ +L + L+  LF+HL N +S   GGN
Sbjct: 253 IKVGVLYIDLDTPLFEHLLNSNS--SGGN 279


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 692 AVKYLFLFFVSNVKSHHIDAFEMWCWRKMLRIPWTAY 582
           +VK + LF  + V  + +D  E+WC     R+ W AY
Sbjct: 241 SVKLVGLFITAVVGLYTVD--ELWCLLNDKRVTWKAY 275


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 355 SRLKYT*LLIFMSINKQGATGNRT*NIHDLLSLHSHITLSP 477
           SR  ++ L  + S N   +T +R   IHD LSL S  T SP
Sbjct: 137 SRPSHSLLYPYTSSNNMTST-SRMSGIHDALSLQSDFTRSP 176


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 621 VLEEDATNPVDSISD*RIHVKTAQYPNQA 535
           VL +DA+ P+D I    IH K  + PNQA
Sbjct: 160 VLHDDASCPIDDIWSVLIHNKNVK-PNQA 187


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +1

Query: 493 WPKNSNILLKQMVESLVWI----LSCLNMDALVRYAV-HGIRSIFLQ 618
           W   SN+L  QM+   VW     LS L+  A +  AV H +  +FLQ
Sbjct: 72  WNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,782
Number of Sequences: 5004
Number of extensions: 64516
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)