Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9g10
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0700 - 5413026-5413122,5413226-5413356,5413840-5413905,541...    29   2.9  
03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835     29   3.8  
02_01_0065 - 477465-477512,477593-477685,477777-478316,478667-47...    29   5.0  
01_03_0003 + 11509530-11512772                                         28   6.6  

>01_01_0700 -
           5413026-5413122,5413226-5413356,5413840-5413905,
           5413986-5414037,5414496-5414581,5414682-5414851,
           5414974-5415057,5415302-5415372,5415461-5415621
          Length = 305

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 337 IAGFDNSRLKYT*LLIFMSINKQGATGNRT*NIHDLLSLHSHITLSPL-FLAMWPKNSNI 513
           + G+D SR+     L+F  I++  A    T   H  LS   H ++ P    A+  K  ++
Sbjct: 203 LTGYDESRMPLKPELVFEDISQDHARKTVTIEDHPHLSAGKHASVHPCKHAAVMKKIIDV 262

Query: 514 LLKQMVE 534
           L+ Q VE
Sbjct: 263 LMSQGVE 269


>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
          Length = 379

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 361 VDYYQSRQCGFWTIIGKSEKRIIDFVFHWQ 272
           +D+Y+S Q G W   GK E+ + + + H Q
Sbjct: 270 LDFYRSWQQGRWRFFGKHEQDVFNLIKHEQ 299


>02_01_0065 -
           477465-477512,477593-477685,477777-478316,478667-478670,
           479494-480063,480167-480204
          Length = 430

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 424 T*NIHDLLSLHSHITLSPLFLAMWPKNSNILLKQMVE 534
           T  +HDL   HSH+  +P    + P   NI   Q VE
Sbjct: 110 TYKVHDLAVEHSHLLQTPQTSRLMPSQRNISKHQAVE 146


>01_03_0003 + 11509530-11512772
          Length = 1080

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +1

Query: 433 IHDLLSLHSHITLSPLFLAMWPKNSNILLKQMVESLVWILSCLNMDALVRY 585
           + DL +LH  +++SPL    W +     +  +++ +     CL  ++ +RY
Sbjct: 740 LKDLNNLHGPLSISPLEHINWERTCEARVADLIKKVHVTRLCLRWNSHIRY 790


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,669,315
Number of Sequences: 37544
Number of extensions: 370892
Number of successful extensions: 721
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)