Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9g08
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical ...   107   6e-24
Z81493-7|CAE46664.1|  342|Caenorhabditis elegans Hypothetical pr...    37   0.012
Z81493-6|CAB04038.1|  335|Caenorhabditis elegans Hypothetical pr...    37   0.012
Z75712-10|CAB00039.2|  332|Caenorhabditis elegans Hypothetical p...    37   0.012
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC024859-7|AAK29968.1|  550|Caenorhabditis elegans Hypothetical ...    29   2.4  
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z36238-8|CAH04738.1|  448|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U88308-18|AAK68217.1|  198|Caenorhabditis elegans Uncoordinated ...    27   9.8  
U88308-17|AAK68214.1|  657|Caenorhabditis elegans Uncoordinated ...    27   9.8  
U88308-16|AAK68212.1|  586|Caenorhabditis elegans Uncoordinated ...    27   9.8  
U88308-14|AAK68213.1|  546|Caenorhabditis elegans Uncoordinated ...    27   9.8  
U88308-13|AAK68215.1|  534|Caenorhabditis elegans Uncoordinated ...    27   9.8  
AF144262-1|AAD37370.1|  289|Caenorhabditis elegans AP180-like ad...    27   9.8  
AF144259-1|AAD37367.1|  546|Caenorhabditis elegans AP180-like ad...    27   9.8  
AF144257-1|AAD37365.1|  586|Caenorhabditis elegans AP180-like ad...    27   9.8  

>AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.2 protein.
          Length = 345

 Score =  107 bits (258), Expect = 6e-24
 Identities = 63/157 (40%), Positives = 93/157 (59%), Gaps = 7/157 (4%)
 Frame = +3

Query: 249 INFPR--NLNYDSPSSCSV-TCGRNLNIEFRSIVDNFLIRLGIWHILPNS---EIKDVAD 410
           +NF R  N +Y+  +S +V + GR+L++  +S       R+G+WHILPN    E +    
Sbjct: 44  LNFRRLPNTDYNDLASNNVKSIGRSLHLPGKSG------RIGVWHILPNKLSLEWRTEGK 97

Query: 411 LKTNNTFHEL-KNSRNPVILYCHGNSNHRASPHRLKIYSVFQELNFHVVTFDYRGYGDST 587
             T   F ++ ++S N +I Y HGNS  R   HR+++Y++  + N+HVV FDYRGYGDS 
Sbjct: 98  HPTERDFDDMMRDSENQIIFYAHGNSFDRTFYHRVEMYNLLSDCNYHVVCFDYRGYGDS- 156

Query: 588 KVKPTERGVVEDLFHVYSWLLKTLDLEEEPTVFVWGH 698
           +  PTE+G+VED   VY WL +      +  V VWGH
Sbjct: 157 EGTPTEKGIVEDTKTVYEWLKENCG---KTPVIVWGH 190


>Z81493-7|CAE46664.1|  342|Caenorhabditis elegans Hypothetical
           protein F01D5.7b protein.
          Length = 342

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = +3

Query: 423 NTFHELKNSRNPVILYCHGNSNHRAS---PHRLKIYSVFQEL-NFHVVTFDYRGYGDSTK 590
           N + +     N V+L+C  +S    S   P+ +  +S F  L    V  FDY GYG S+ 
Sbjct: 110 NCYSKNPEVANQVVLFCQSSSADLGSFLQPNSMN-FSTFANLFETDVYAFDYSGYGFSSG 168

Query: 591 VKPTERGVVEDLFHVYSWLLKT 656
            + +E+ +  D+  VY  +LKT
Sbjct: 169 TQ-SEKNMYADVRAVYEHILKT 189


>Z81493-6|CAB04038.1|  335|Caenorhabditis elegans Hypothetical
           protein F01D5.7a protein.
          Length = 335

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = +3

Query: 423 NTFHELKNSRNPVILYCHGNSNHRAS---PHRLKIYSVFQEL-NFHVVTFDYRGYGDSTK 590
           N + +     N V+L+C  +S    S   P+ +  +S F  L    V  FDY GYG S+ 
Sbjct: 110 NCYSKNPEVANQVVLFCQSSSADLGSFLQPNSMN-FSTFANLFETDVYAFDYSGYGFSSG 168

Query: 591 VKPTERGVVEDLFHVYSWLLKT 656
            + +E+ +  D+  VY  +LKT
Sbjct: 169 TQ-SEKNMYADVRAVYEHILKT 189


>Z75712-10|CAB00039.2|  332|Caenorhabditis elegans Hypothetical
           protein K04G2.2 protein.
          Length = 332

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +3

Query: 462 ILYCHGNSNHRASPHRLKIYSVFQELNFHVVTFDYRGYGDSTKVKPTERGVVEDLFHVYS 641
           +L+ HGN+          +Y +   LN +V ++DY GYG ST  KP+E+ +  D+   + 
Sbjct: 115 LLFSHGNAVDLGQMTSF-LYGLGFHLNCNVFSYDYSGYGCSTG-KPSEKNLYADITAAFE 172

Query: 642 WLLKTLDLEEEPTV 683
            L     + +E  +
Sbjct: 173 LLKSEFGVPKEKII 186


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 215 RGSTATWNTRTPAVSEAPVAKRSPKTMLRRKYST 114
           RGSTA   TR P  + AP A R+P    R   +T
Sbjct: 298 RGSTAAPGTRAPPATRAPPATRAPPATTRAPPAT 331


>AC024859-7|AAK29968.1|  550|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.13 protein.
          Length = 550

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
 Frame = +3

Query: 372 HILPNSEIKDVADLKTNNTFHELKNSRN----PVILYCHGNSNHRASPHRLKIYSVFQEL 539
           H+L         D  T N F  +   +N    PVILY HG      S H+    S+ Q L
Sbjct: 84  HVLSPKTSPQSEDNLTLNIFTPVWTPKNETGFPVILYIHGGGFVSDSAHKYGDMSICQHL 143

Query: 540 ---NFHVVTFDYR----GYGDSTKVKPTERGVVEDLFHVYSWLLKTLDL 665
              +  VVT  YR    G+  +      +   + D+     W+ + + L
Sbjct: 144 VTKDVVVVTIQYRLGFLGFWTTGDSSIPDNVALHDMVFALKWVKENIGL 192


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 400 SLISEFGSICQIPNLMRKLSTIERNSMLRFLPHVTLQ 290
           S++  F SI Q+  + + LSTIERN +   L    +Q
Sbjct: 195 SIVCNFLSIMQLKLMKKNLSTIERNLLFSTLASSVIQ 231


>Z36238-8|CAH04738.1|  448|Caenorhabditis elegans Hypothetical
           protein R74.8b protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 243 EEINFPRNLNYDSPSSCSVTCGRNLN 320
           E++ +P  + YD  S   + C RNLN
Sbjct: 202 EKLGYPLGVTYDEKSKYWIICDRNLN 227


>Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical
           protein R74.8a protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 243 EEINFPRNLNYDSPSSCSVTCGRNLN 320
           E++ +P  + YD  S   + C RNLN
Sbjct: 202 EKLGYPLGVTYDEKSKYWIICDRNLN 227


>U88308-18|AAK68217.1|  198|Caenorhabditis elegans Uncoordinated
           protein 11, isoform f protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 239 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 135
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 92  TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 127


>U88308-17|AAK68214.1|  657|Caenorhabditis elegans Uncoordinated
           protein 11, isoform c protein.
          Length = 657

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 239 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 135
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 551 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 586


>U88308-16|AAK68212.1|  586|Caenorhabditis elegans Uncoordinated
           protein 11, isoform a protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 239 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 135
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 480 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 515


>U88308-14|AAK68213.1|  546|Caenorhabditis elegans Uncoordinated
           protein 11, isoform b protein.
          Length = 546

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 239 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 135
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 440 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 475


>U88308-13|AAK68215.1|  534|Caenorhabditis elegans Uncoordinated
           protein 11, isoform d protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 239 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 135
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 428 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 463


>AF144262-1|AAD37370.1|  289|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 289

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 239 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 135
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 183 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 218


>AF144259-1|AAD37367.1|  546|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 546

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 239 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 135
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 440 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 475


>AF144257-1|AAD37365.1|  586|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 239 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 135
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 480 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,552,280
Number of Sequences: 27780
Number of extensions: 288200
Number of successful extensions: 958
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)