Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9g06
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0491 + 18043087-18043548                                         31   0.68 
11_06_0527 + 24672649-24672707,24673459-24673817,24674366-246744...    30   2.1  
06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615           29   2.8  
08_01_0100 - 714244-715461                                             28   6.4  
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085...    28   6.4  
07_03_1336 - 25868238-25868284,25868731-25869079                       28   8.4  
03_05_0365 + 23502925-23502929,23503288-23503453,23504597-235047...    28   8.4  

>09_04_0491 + 18043087-18043548
          Length = 153

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 167 CGAHASGWAGPPANIALSQDGRNILDTPEVAQARAAHISALQQASKNNPNPNDDGSYD 340
           C ++ SGW    A+   S D R I+      +  +   +  ++  +N  + NDDG YD
Sbjct: 14  CNSNESGWTMYLASPTHSDDVRAIVSEGSNVEDGSGFSNERRRGKENKGHANDDGDYD 71


>11_06_0527 +
           24672649-24672707,24673459-24673817,24674366-24674435,
           24674656-24674730,24674731-24674846,24674975-24675006,
           24675117-24675242,24675379-24675537,24675886-24675978,
           24676069-24676236,24676388-24676486,24676603-24676820,
           24676900-24676957,24677421-24677509,24677590-24677721,
           24678000-24678122,24678568-24678666,24678774-24678965,
           24679127-24679298,24679416-24679572,24679704-24679906,
           24680105-24680246,24680324-24680484,24680585-24680701,
           24680788-24680874
          Length = 1101

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 98  QIXIFSIRISNLQKIVVACL--ALACGAHASGWAGPPANIALSQ 223
           ++ +++++ SNL++I+  C     AC A    W G   ++ LSQ
Sbjct: 430 EMAVYALQCSNLKRILPICTDWESACWAMTKSWLGVQVDLVLSQ 473


>06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615
          Length = 390

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 188 WAGPPANIALSQDGRNILDTPEVAQARAAHISALQQ 295
           W+  P+++  S+DGR  +   E++ A +AHI  + +
Sbjct: 289 WSEIPSDVESSRDGRRYISGEELSDADSAHIVVMDK 324


>08_01_0100 - 714244-715461
          Length = 405

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +3

Query: 186 VGPAHPPTLLCLKMDAIFWTHPKSHRLVPHTFPLFSRLRKITPTQMT-TDHTTLDG 350
           VGPAH        +D + WT P+    V   F LF   R + P  +   DH    G
Sbjct: 313 VGPAHRLPFFDGTLDIVHWTSPEHVAGVMLEFALFDIYRVLRPGGLLWLDHFVFPG 368


>04_04_1331 -
           32706043-32707248,32707411-32707652,32707737-32708562,
           32708640-32708863,32708946-32709262,32709381-32709443,
           32709465-32709640,32710609-32710985,32711416-32711470,
           32711614-32711913
          Length = 1261

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/79 (27%), Positives = 32/79 (40%)
 Frame = +2

Query: 59  IYTKIYHIYXKVIQIXIFSIRISNLQKIVVACLALACGAHASGWAGPPANIALSQDGRNI 238
           I T +Y +   ++Q   FSI   NL   V   +  A   +  GW     N +     R  
Sbjct: 745 IGTGLYAVVAYLVQHYFFSIMGENLTTRVRRMMLSAILTNEVGWFDEEENNSSLVAARLA 804

Query: 239 LDTPEVAQARAAHISALQQ 295
           +D  +V  A A  IS + Q
Sbjct: 805 VDAADVKSAIAERISVILQ 823


>07_03_1336 - 25868238-25868284,25868731-25869079
          Length = 131

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 140 IVVACLALACGAHASGWAGPPANIALSQDGRNI 238
           +VVA LALACGA +   A  PA    S  G +I
Sbjct: 9   VVVAVLALACGAASQSPAPAPAAGPASDCGSSI 41


>03_05_0365 +
           23502925-23502929,23503288-23503453,23504597-23504796,
           23504814-23505144
          Length = 233

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 274 CGTSL-CDFGCVQNIASILRQSNVGGWAGPTGRVCAARQRQTSYYDL 137
           CG  L C +  V     +++Q+ +GGW G +G+  A +Q   ++  L
Sbjct: 35  CGLPLPCPY-IVSTHHYLIKQNQLGGWRGSSGQQLAVQQDAAAHSSL 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,975,267
Number of Sequences: 37544
Number of extensions: 266487
Number of successful extensions: 1110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)