Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9g06
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   2.5  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   2.5  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81527-2|CAB04270.1|  361|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 583  VRCSCPTTMERPSSPGLECPRPPGLERSRS-PGLECSPLTN 702
            V+CSC  T E    PG + P    L  S S P  EC P  N
Sbjct: 2757 VQCSCNDTYELVQEPGKDYPTQCVLRGSNSEPAKECLPPYN 2797


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 583  VRCSCPTTMERPSSPGLECPRPPGLERSRS-PGLECSPLTN 702
            V+CSC  T E    PG + P    L  S S P  EC P  N
Sbjct: 2757 VQCSCNDTYELVQEPGKDYPTQCVLRGSNSEPAKECLPPYN 2797


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +1

Query: 589 CSCPTTME--RPSSPGLECPRPPGLERSRSPGLECSPLT 699
           C CP   +   P S G   P+PP    + +PG    P T
Sbjct: 274 CPCPQRQDDRTPPSSGTSAPQPPPRGSTAAPGTRAPPAT 312


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
           protein ZK1067.2 protein.
          Length = 2219

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 616 PSSPGLECPRPPGLERSRSPGLECSPLTNH 705
           P  PGL  P PPG+     PG+    L NH
Sbjct: 44  PQPPGLSIPAPPGISLPTPPGIS---LQNH 70


>AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical
           protein K12B6.8 protein.
          Length = 714

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = +1

Query: 388 ERCSRSCLERCPRPLMER---CPCC 453
           ERC++S  E+C  PL+++   CP C
Sbjct: 673 ERCTKSIHEKCAAPLLQQSVMCPTC 697


>Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical
           protein ZK849.4 protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +2

Query: 197 PPANIALSQDGRNILDTPEVAQARAAHISALQQASKNNPNPN---DDGSYDPRWDNE 358
           PPA    +   R+ L     AQA  A  +  Q  S   PNPN   D+  + P  DNE
Sbjct: 505 PPAEALRADQPRHSLIHEVGAQADPAEANGAQALSPVLPNPNERADEHGHSPVIDNE 561


>Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical
           protein C29E6.4 protein.
          Length = 906

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 167 CGAHASGWAGPPANIALSQDGRNIL 241
           C AH  G  GPPA++ L  DG  +L
Sbjct: 745 CTAHRVGGTGPPASVNLIADGCALL 769


>Z81527-2|CAB04270.1|  361|Caenorhabditis elegans Hypothetical
           protein F35E12.2 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 207 TLLCLKMDAIFWTHPKSHRLVPHTFPLFSRLRKITPTQMTTDHTTLDGTMKS 362
           T +C      +WT  K H+   +    +  LR ++PT  T+  T L+ TM S
Sbjct: 273 TWICSDCQHFYWTVLKFHKSKTNISKTYIELRPLSPTYNTS--TLLNYTMSS 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,229,353
Number of Sequences: 27780
Number of extensions: 217904
Number of successful extensions: 830
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)