Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9g06
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.7  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 76  PYLLXSNSNXDFLYPYF 126
           PYL   N    FL PYF
Sbjct: 8   PYLCYKNGGGAFLIPYF 24


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 76  PYLLXSNSNXDFLYPYF 126
           PYL   N    F+ PYF
Sbjct: 46  PYLCYKNGGGAFMVPYF 62


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 76  PYLLXSNSNXDFLYPYF 126
           PYL   N    F+ PYF
Sbjct: 99  PYLCYKNGGGAFMVPYF 115


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 131 LQKIVV-ACLALACGAHASGWAG 196
           L K+V+   LA  CGA  + +AG
Sbjct: 2   LSKVVLLVALAAICGAQGASYAG 24


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 131 LQKIVV-ACLALACGAHASGWAG 196
           L K+V+   LA  CGA  + +AG
Sbjct: 2   LSKVVLLVALAAICGAQGASYAG 24


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -2

Query: 521 LRGREQI--RQHSRNELGQRSMKE 456
           LR  + I  RQHS+NE  ++ M++
Sbjct: 48  LRNHKSIYHRQHSKNEQQRKEMEQ 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,456
Number of Sequences: 438
Number of extensions: 2739
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)