Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9g04
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    25   4.5  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   5.9  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   7.8  

>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 261 HNLLRPVTS*VIYLNYSISRD 323
           HNL+RP T   +++ Y I+RD
Sbjct: 408 HNLMRPETVESLFILYRITRD 428


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 174  KICLKKVSALSICNLNYSSLSVYWKDINYI 85
            +IC K    LSI  L Y+S   Y+K +  I
Sbjct: 946  RICQKLEKELSIIQLTYNSRIEYYKQLQEI 975


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 105 WKDINYIWFIKAVPKLLNFDHKFKAWI 25
           W  +  +W      KLLN D+ + AWI
Sbjct: 345 WDALRKVWLF-ITNKLLNKDNMYTAWI 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,987
Number of Sequences: 5004
Number of extensions: 28178
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)