Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9g04
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49829-4|AAK68350.1|  427|Caenorhabditis elegans Dehydrogenases,...    27   5.3  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z81536-3|CAB63200.1|  333|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U49829-4|AAK68350.1|  427|Caenorhabditis elegans Dehydrogenases,
           short chain protein29 protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -3

Query: 207 FCNLNLLHLIYKICLKKVSAL--SICNLNYSSLSVYWKDINYIWFIKAVPKL 58
           FC+L +   +      K SA   S C L    +S Y+K     W++  VP L
Sbjct: 281 FCSLQVCRSLRNYLGVKYSASDPSFCKLTLIEMSDYYKTPQLFWWLLIVPAL 332


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
           protein F59E12.9 protein.
          Length = 1621

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 435 KVEKPPLFTYISFKQADPADF 373
           K EKPP+  Y+    +D ADF
Sbjct: 73  KKEKPPILNYLDDSDSDSADF 93


>Z81536-3|CAB63200.1|  333|Caenorhabditis elegans Hypothetical
           protein F40D4.3 protein.
          Length = 333

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 123 SSLSVYWKDINYIWFIKAVPKLLNFDHKFKAWI 25
           ++LS +  DINY  F+ A   L  F H F A+I
Sbjct: 4   TTLSFFASDINYSKFLHAFTILEIFIHSFGAYI 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,035,871
Number of Sequences: 27780
Number of extensions: 151489
Number of successful extensions: 324
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)