Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9f22
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    31   0.087
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    26   2.5  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    26   2.5  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    25   4.3  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.7  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   5.7  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   7.5  
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    25   7.5  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    24   9.9  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    24   9.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   9.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   9.9  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    24   9.9  

>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 31.1 bits (67), Expect = 0.087
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 230 KIPLISTSGNQRTKPMNNIENTIVTNSRPRLTNRTRDQGMVPGRTLHTIPMLR 388
           KI   +T      +  N + NT+V  SR  +T    D G +  R  HT+P+ R
Sbjct: 162 KIDTYTTYNIDGAELPNRVGNTLVYESRETITGEDNDLGEIYVRYEHTVPIPR 214


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 183 K*KKLSRLQDNRQPNVKSH*YPHLEIKERSL*ITLKIRS*LILVLD*LIEQEIRAWFL 356
           K KK  +L+ ++QP +    YP L+  E +L   LKI     LV   L + +  +W L
Sbjct: 59  KKKKKKKLKKSQQP-LNEENYPRLQTTENNLQKPLKISDLQELVFWCLADGQAPSWVL 115


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 250 CGY*WDFTFGCLLSCSRDNFFYFWFIR 170
           CG  WD + G L S   DN  + W  R
Sbjct: 253 CGLQWDRSLGQLASGGNDNNLFVWDYR 279


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 284 IENTIVTNSRPRLTNRTRDQGMVP 355
           +++T+  +S+P LTN T  Q  +P
Sbjct: 408 LQHTLKISSKPTLTNATLQQNCIP 431


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +2

Query: 92  SKKTARSYKF**IHNAIIS--MIMSLIVSDEPKIEEIITAARQQTTKCKIPLISTSGNQR 265
           S++ + S+     HN   S   I++ + +D+P+IE+ +T    ++ K K+ +        
Sbjct: 183 SEQVSSSFNSRVAHNRNFSDGPIVTNLETDQPRIEKKLTIDSSRSAKKKLSVEKERRFSD 242

Query: 266 TKPMNNI 286
            KP +N+
Sbjct: 243 NKPSSNV 249


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 17/82 (20%), Positives = 39/82 (47%)
 Frame = +2

Query: 209 RQQTTKCKIPLISTSGNQRTKPMNNIENTIVTNSRPRLTNRTRDQGMVPGRTLHTIPMLR 388
           +Q+  +   P + ++ N+  +  ++  ++   +S+  L   ++ Q   P + L T    +
Sbjct: 373 KQKVVQNSPPSLLSTDNKIPESGSDHPSSQDNSSKASLVENSQTQSSTPRKPLPTTTSPK 432

Query: 389 IRPEREKLLPALKRPSTIPKRV 454
           + PE      +  RPST P++V
Sbjct: 433 VNPEPHSESISDTRPST-PRKV 453


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 340 SGHGSWKDTTYYSHAKNTTRA*KIIAST 423
           S +  WK T +Y+H   T +A + I  T
Sbjct: 273 SRYTHWKQTVFYTHKDLTVKAGEYIRGT 300


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 257 NQRTKPMNNIENTIVTNSRPRLTNRTRDQGMVPGRTL 367
           + R  P     N+  T+S  ++ N+T    ++PG  L
Sbjct: 47  SSRVSPKKPQHNSDATSSAQKVANKTHTSSVLPGTIL 83


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 217 LLSCSRDNFFYFWFIR 170
           L+SCSRD    FW +R
Sbjct: 244 LVSCSRDGSIIFWDMR 259


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 193 NYHGCKTTDNQM*NPINIH 249
           N H C+TT +   N IN H
Sbjct: 655 NLHACRTTTHSSVNSINSH 673


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 310 SSSIN*SNKRSGHGSWKDTTYYSHAKNTTR 399
           ++S N + +RS  GS K     SH+KNT +
Sbjct: 561 NNSKNQTYRRSSRGSNKTRKSISHSKNTDK 590


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 236  PLISTSGNQRTKPMNNIENTIVTNSRPRLTNRTRDQ 343
            P  +T    R KP NN  NTI+  +  R   R   Q
Sbjct: 1695 PTTTTISTARAKPGNNDINTILRRNNSRGRRRMLQQ 1730


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 392 RPEREKLLPALKRPSTIPKRV 454
           RP+R  + PA +R +T P+RV
Sbjct: 151 RPQRPVVTPAKRRFNTTPERV 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,498
Number of Sequences: 5004
Number of extensions: 34828
Number of successful extensions: 83
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)