Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9f22
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0288 + 3824337-3826385 30 0.80
04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814 30 0.80
03_06_0357 - 33359403-33359579,33361111-33361245,33362304-33362492 29 1.8
03_01_0537 + 4029790-4029827,4030048-4030171,4030491-4030754,403... 29 1.8
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 27 5.6
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 27 5.6
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 27 5.6
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012 27 5.6
03_03_0050 - 14086954-14087079,14087152-14088045 27 5.6
01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884... 27 5.6
01_05_0630 - 23811576-23811728,23812473-23812561,23812644-238127... 27 9.8
>04_01_0288 + 3824337-3826385
Length = 682
Score = 30.3 bits (65), Expect = 0.80
Identities = 15/45 (33%), Positives = 30/45 (66%)
Frame = -2
Query: 312 RELVTIVFSMLFIGFVL*FPDVDINGILHLVVCCLAAVIISSIFG 178
R LVT+V +L +G+VL + ++ NG++ +V L +V+ ++ +G
Sbjct: 107 RHLVTLVVQVLGVGYVL-YKNIAGNGMMIVVAAILMSVVGTAKYG 150
>04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814
Length = 582
Score = 30.3 bits (65), Expect = 0.80
Identities = 15/45 (33%), Positives = 30/45 (66%)
Frame = -2
Query: 312 RELVTIVFSMLFIGFVL*FPDVDINGILHLVVCCLAAVIISSIFG 178
R LVT+V +L +G+VL + ++ NG++ +V L +V+ ++ +G
Sbjct: 107 RHLVTLVVQVLGVGYVL-YKNIAGNGMMIVVAAILMSVVGTAKYG 150
>03_06_0357 - 33359403-33359579,33361111-33361245,33362304-33362492
Length = 166
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 431 VSLVLAIIFHALVVFLAWE*YVVSFQEP 348
++LV+ ++FH L+V L W + V F +P
Sbjct: 52 LALVVLLLFHFLLVMLLWSYFSVVFTDP 79
>03_01_0537 +
4029790-4029827,4030048-4030171,4030491-4030754,
4030847-4030978,4031068-4031184,4031687-4031963,
4037100-4037137
Length = 329
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 185 IEEIITAARQQTTKCKIPLISTSGNQRTKPMNNIENTIVTNSRP 316
+ E + RQQ +C+ L S + NQ + P +NI + + P
Sbjct: 57 LHERLNKFRQQQERCQTTLSSIAANQASTPRSNITRWVQPTNGP 100
>09_06_0001 +
20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 146 SMIMSLIVSDEPKIEEIITAARQQTTKCKIPLISTSGNQRTKPMNNIENTIVTNS 310
S + SLI + + +E I A++Q+ P +S RTKP N + T NS
Sbjct: 59 SEVESLIETPDGDVE-ITFASKQKAFLQSRPSVSLDSRPRTKPQNVVYATYEDNS 112
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 146 SMIMSLIVSDEPKIEEIITAARQQTTKCKIPLISTSGNQRTKPMNNIENTIVTNS 310
S + SLI + + +E I A++Q+ P +S RTKP N + T NS
Sbjct: 208 SEVESLIETPDGDVE-ITFASKQKAFLQSRPSVSLDSRPRTKPQNVVYATYEDNS 261
>04_03_0659 - 18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +2
Query: 140 IISMIMSLIVSDEPKIEEIITAARQQTTKCKIPLISTSGNQRTKPMNNIENTIVTN 307
I+S + I S K + A Q K + LIS + QRTK I+ T TN
Sbjct: 904 ILSRKCAEIASQGSKSIDSFQFAVDQIDKLEKELISMNSEQRTKQQMEIDKTDTTN 959
>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
Length = 890
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 146 SMIMSLIVSDEPKIEEIITAARQQTTKCKIPLISTSGNQRTKPMNNIENTIVTNS 310
S + SLI + + +E I A++Q+ P +S RTKP N + T NS
Sbjct: 59 SEVESLIETPDGDVE-ITFASKQKAFLQSRPSVSLDSRPRTKPQNVVYATYEDNS 112
>03_03_0050 - 14086954-14087079,14087152-14088045
Length = 339
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +2
Query: 140 IISMIMSLIVSDEPKIEEIITAARQQTTKCKIPLISTSGNQRTKPMNNIENTIVTN 307
I+S + I S K + A Q K + LIS + QRTK I+ T TN
Sbjct: 161 ILSRKCAEIASQGSKSIDSFQFAVDQIDKLEKELISMNSEQRTKQQMEIDKTDTTN 216
>01_01_1116 +
8839946-8840048,8840142-8842064,8842192-8842307,
8843340-8843763,8845187-8845452
Length = 943
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 146 SMIMSLIVSDEPKIEEIITAARQQTTKCKIPLISTSGNQRTKPMNNIENTIVTNS 310
S + SLI + + +E I A++Q+ P +S RTKP N + T NS
Sbjct: 208 SEVESLIETPDGDVE-ITFASKQKAFLQSRPSVSLDSRPRTKPQNVVYATYEDNS 261
>01_05_0630 -
23811576-23811728,23812473-23812561,23812644-23812764,
23812867-23812992,23813399-23813505,23813742-23813856,
23815071-23815274
Length = 304
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 185 IEEIITAARQQTTKCKIPLISTSGNQRTKPMNNIENTIVTN-SRPRLTNRTRDQGMVPGR 361
+E + + + Q+TK +T N+ + ++ + T S+P T RT + + GR
Sbjct: 74 VEPMSSTSSSQSTKPAARSSATPSNENVRARDSGSSARSTAASQPSQTERTANSLWLDGR 133
Query: 362 TLH 370
T+H
Sbjct: 134 TIH 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,937,111
Number of Sequences: 37544
Number of extensions: 190112
Number of successful extensions: 418
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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