Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte9f21
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 73 2e-14
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 42 5e-05
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 31 0.070
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 30 0.21
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 29 0.49
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 29 0.49
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 3.5
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 3.5
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 6.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 72.9 bits (171), Expect = 2e-14
Identities = 31/47 (65%), Positives = 36/47 (76%)
Frame = +2
Query: 344 FWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYVPRAVLV 484
FW I+DEHG+D G Y G S+ Q ER+NVY+NEA G KYVPRAVLV
Sbjct: 20 FWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYVPRAVLV 66
Score = 37.1 bits (82), Expect = 0.001
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +2
Query: 131 MREIVHVQVGRCGNQIGS 184
MREIVH+Q G+CGNQ+G+
Sbjct: 1 MREIVHIQAGQCGNQVGA 18
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 41.9 bits (94), Expect = 5e-05
Identities = 16/48 (33%), Positives = 31/48 (64%)
Frame = +2
Query: 341 QFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYVPRAVLV 484
QFW+ + EHGI P G + + ++R +V++ ++ +Y+PRA+L+
Sbjct: 20 QFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIPRAILI 67
Score = 31.9 bits (69), Expect = 0.053
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +2
Query: 134 REIVHVQVGRCGNQIGSK 187
REI+ +Q G+CGNQIGS+
Sbjct: 3 REIITLQAGQCGNQIGSQ 20
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 31.5 bits (68), Expect = 0.070
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 347 WEVISDEHGIDPCGRYQGDSDLQLE--RINVYYNEAFGAKYVPRAVLV 484
WE+ EHGI P G ++ Q + +++E KYVPR++ V
Sbjct: 21 WELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYV 68
Score = 27.1 bits (57), Expect = 1.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 131 MREIVHVQVGRCGNQIGS 184
MREI+ + VG+ G QIG+
Sbjct: 1 MREIISIHVGQAGTQIGN 18
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 29.9 bits (64), Expect = 0.21
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Frame = +2
Query: 347 WEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFG--------AKYVPRAVLV 484
WE+ EHGI P G +S ++ + N Y N+ FG K+VPR++ V
Sbjct: 21 WELYCLEHGIGPDGFPTENS--EVHKNNSYLNDGFGTFFSETGQGKFVPRSIYV 72
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 131 MREIVHVQVGRCGNQIGS 184
MRE++ V VG+ G QIG+
Sbjct: 1 MREVISVHVGQAGVQIGN 18
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 0.49
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 179 QSGSHISRPVRELFLSFSCINNKEFIEN 96
QS SHISR ELF + I N F EN
Sbjct: 78 QSNSHISRNENELFSKENSIYNGNFSEN 105
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 28.7 bits (61), Expect = 0.49
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 390 RPQGSIPCSSDITSQNWSSFM 328
RPQ I C + S+NW+SF+
Sbjct: 481 RPQNIIKCQYGLISENWTSFL 501
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 386 GRYQGDSDLQLERINVYYNEAFGAK 460
GR + L +N+YY +FGAK
Sbjct: 667 GRTDHRHNFSLHHLNLYYESSFGAK 691
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 364 VRYHFPKLEQFYVNKKKTTI 305
V+YH PK E+ N KT I
Sbjct: 516 VQYHLPKREELQSNSNKTVI 535
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 367 LVRYHFPKLEQFYVNKK 317
+VR HFP+LE F V+ K
Sbjct: 1127 IVRTHFPQLEAFLVDLK 1143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,949
Number of Sequences: 5004
Number of extensions: 37167
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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