Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9f21
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.43 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.43 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.43 
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    22   4.0  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    22   4.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.2  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   9.2  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 209 SYIFDNSTLAQPVP*ALSIEYNMNNVTYLQT*DRSFFFVHI 331
           +Y+  N T+  P+  +    Y+   V  + T DR+F+F  +
Sbjct: 236 AYLIKNQTITCPIKVSWRGNYSCLKVDLIFTRDRAFYFTTV 276


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 209 SYIFDNSTLAQPVP*ALSIEYNMNNVTYLQT*DRSFFFVHI 331
           +Y+  N T+  P+  +    Y+   V  + T DR+F+F  +
Sbjct: 287 AYLIKNQTITCPIKVSWRGNYSCLKVDLIFTRDRAFYFTTV 327


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 209 SYIFDNSTLAQPVP*ALSIEYNMNNVTYLQT*DRSFFFVHI 331
           +Y+  N T+  P+  +    Y+   V  + T DR+F+F  +
Sbjct: 236 AYLIKNQTITCPIKVSWRGNYSCLKVDLIFTRDRAFYFTTV 276


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 344 TGAVLCEQKKNYDL 303
           T A+LC QK  +DL
Sbjct: 21  TVAILCSQKAGFDL 34


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 344 TGAVLCEQKKNYDL 303
           T A+LC QK  +DL
Sbjct: 21  TVAILCSQKAGFDL 34


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 154  GREMWEPDWLEGKKNMNIIVHF*QFNP 234
            G+   EP WLEG      +++  Q +P
Sbjct: 991  GKRRKEPPWLEGVHVTPELIYEYQIHP 1017


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 166 TSPDLYVNYFSHSRVLITKNLS 101
           TSP+ +V  +   RVL +  L+
Sbjct: 104 TSPNKFVRLYQDGRVLYSSRLT 125


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 203 FIFFLPSSQSGSHISRPVRELFLSFSCIN 117
           F F         H+SR + ++FL+ + IN
Sbjct: 70  FSFVDKDGNFNEHVSREIAKIFLNENEIN 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,971
Number of Sequences: 438
Number of extensions: 2640
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)