Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9f19
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    47   3e-06
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    44   1e-05
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    38   0.001
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    31   0.14 
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    28   0.98 
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   1.7  
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    27   2.3  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   5.2  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   6.9  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   9.1  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    25   9.1  

>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 33/127 (25%), Positives = 53/127 (41%)
 Frame = +3

Query: 240 CPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAKTEVLDPDFEEDLSLWMCLRCGTQLCG 419
           C H+ K V L+ LK   +             +  TE +     ED  L +C  CG   C 
Sbjct: 56  CSHLKKGVKLSHLKGNAR--ALRDPSKHLCFICTTEKIK---REDYELTLCANCGYLFCC 110

Query: 420 RTRNKHALNHFNTPHSDCHALAANSTTWEIYCYNCNNEVTASTAKKLHECIEYLKKQFLA 599
              + H+  HF    +  H +  N  T + +CY+C+ ++     K L   +    +QF+ 
Sbjct: 111 NHESDHSRKHFE--KNKKHCVFVNIITLKCHCYSCDADIVIFDKKNL---VVRDVQQFIC 165

Query: 600 SSTVKSL 620
           S+ V SL
Sbjct: 166 SNLVSSL 172


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
 Frame = +3

Query: 378 SLWMCLRCGTQLCGRTR------NKHALNHF-NTPHSDCHALAANSTTW--EIYCYNCNN 530
           +LWMCL CG   CGR +      N HAL+H+ +T H     L + S     +IYCY+C+ 
Sbjct: 182 NLWMCLTCGALSCGRKQYGGGGGNGHALSHYDDTGHPLAVKLKSISPDGQADIYCYSCDE 241

Query: 531 E 533
           E
Sbjct: 242 E 242



 Score = 29.1 bits (62), Expect = 0.56
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 366 EEDLSLWMCLRCGTQLCGRTRNKHALNHF 452
           +E+  + +CL C    CG T  KH+L HF
Sbjct: 33  DEEGGIDLCLTCFQSGCGETGLKHSLVHF 61


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 372 DLSLWMCLRCGTQLCGRTRNKHALNHF-NTPHSDCHALAANSTTWEIYCYNCNNEV 536
           D  LW+CL CG   CGR  + HA  H+ +T H  C+A+     T  ++ Y  +N V
Sbjct: 268 DKDLWICLICGNIGCGRYHDAHAKQHYVDTAH--CYAMELE--TQRVWDYAGDNYV 319


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
 Frame = +3

Query: 345 EVLDPDFEE-------DLSLWMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTW 503
           ++LD DFE+       +LS++ CL CG    GR  + HA  H  T +   H +  N +T 
Sbjct: 67  KLLDFDFEKVCSVSLTNLSVYACLVCGRYFQGRGPSSHAYFHALTEN---HHVFVNCSTL 123

Query: 504 EIYCYNCNNEVTASTAKKL 560
           + Y    + +V +S  + +
Sbjct: 124 KFYVLPESYQVESSALQDI 142


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +3

Query: 294 IGGFEKECSECKKVAKTEVLDPDFEEDLSLWM---CLRCGTQLCGRTRNKHALNHFNTPH 464
           +GG EK+  E K+V +  V  P+  E L +      L  G    G+T    A+ H    H
Sbjct: 147 VGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAH----H 202

Query: 465 SDC 473
           +DC
Sbjct: 203 TDC 205


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +3

Query: 474 HALAANSTTWEIYCYNCNNEVTASTAKKLHECIEYLKK 587
           H  ++N    E+  +NC  E++ S  KK++  ++ +++
Sbjct: 79  HIKSSNEAKTELEIFNCYKEISISKEKKINSLLKLVRE 116


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +3

Query: 447 HFNTPHSDCHALAANSTTWEIYCYNCNNEVTASTA 551
           H++T   +   L  + T+ +I C NCN+++T++TA
Sbjct: 233 HYST---NSEMLDLSKTSSDISCPNCNDQLTSTTA 264


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 435 VYCVFGHRVACHNVNTSTRTNLLQNL 358
           ++ + G  V  HN  T+  TN++QNL
Sbjct: 215 LFNIIGLAVQFHNHTTAAETNIIQNL 240


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = -1

Query: 331 FLHSEHSFSNPPILIAFFSRVRSTAFA 251
           +L+ E +FSN  ++ A+F+++++ A A
Sbjct: 109 YLNEETAFSNIQLIAAYFTKIKAIAEA 135


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 162 KKKRQSDPGENGDESTESCEE--NVKSACPHVAKAVDLTRLKKAIKIGGFEKECSECKKV 335
           KK ++    +  D +  S EE  N+     + ++ +D   +K  +K   F+K     KK 
Sbjct: 527 KKNKKGKHTQIEDPTAASKEELENLVREDENDSEQLDHFDMKSILKAEKFKKNRKLKKKA 586

Query: 336 AKTEVLDPDFEEDLS 380
           +  E L   FE D+S
Sbjct: 587 SNLEGLQEGFEADVS 601


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = +3

Query: 354 DPDFEEDLSLW---MCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAAN 491
           DP +++ + ++   +    G   C +      L HF +PH  C  +  N
Sbjct: 86  DPSYKQQILIFTQPLIGNYGVPDCKKRDENGLLRHFESPHIQCAGVVVN 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,066
Number of Sequences: 5004
Number of extensions: 43916
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)