Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte9f19
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294...    41   0.001
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463...    35   0.062
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990...    30   1.3  
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410...    29   4.1  
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912...    28   5.4  
09_04_0652 - 19227686-19227926,19229368-19232294                       28   7.1  

>04_04_1374 -
           33028790-33028951,33029033-33029087,33029402-33029466,
           33029558-33029701,33029825-33029878,33029971-33030220,
           33030340-33030446,33031206-33031216,33032682-33032796,
           33032897-33033005,33033088-33033203,33033288-33033647
          Length = 515

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +3

Query: 234 SACPHVAKAVDLTRLKKA-IKIGGFEKECSECKKVAKTEVLDPDFEEDLSLWMCLRCGTQ 410
           S  P V   V  T L    + IGG ++ C  C+K +K        +   +LW+C+ CG  
Sbjct: 212 STKPAVTPPVGSTELPTCPVCIGG-DQVCQFCQKQSKNPTCSV-CQTSGNLWICIICGFV 269

Query: 411 LCGRTRNKHALNHF-NTPHSDCHAL 482
            CGR    HA+ H+  T H  C++L
Sbjct: 270 GCGRYEEGHAIRHWKETQH--CYSL 292


>02_01_0618 -
           4629776-4630037,4630188-4630330,4631200-4631254,
           4631539-4631603,4631714-4631857,4632141-4632194,
           4632363-4632410,4632466-4632541,4632624-4632722,
           4633000-4633097,4633615-4633719,4633816-4633924,
           4634137-4634252,4634332-4634496
          Length = 512

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 378 SLWMCLRCGTQLCGRTRNKHALNHF-NTPHSDCHAL 482
           +LW+C+ CG   CGR +  HA+ H+  T H  C++L
Sbjct: 217 NLWICVICGHVGCGRYKGGHAIEHWKETQH--CYSL 250


>03_02_0619 +
           9904405-9904586,9905315-9906764,9907320-9907509,
           9909578-9910164
          Length = 802

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
 Frame = +3

Query: 123 CKRERL--RTQDTMVKKKRQSDPGENGDESTESCEENVKSACPHVAKAVDLTRLKKAIKI 296
           C  E++   T + +VKK     P E    S ESC E   SA P   +  +   +     +
Sbjct: 512 CINEKILFTTDEDLVKK-----PAETVHSSFESCGEEKVSASPFNCRDYESITVSDHSYV 566

Query: 297 GGFEKECSECKKVAKTEVLDPDFEEDLSLWMCLRCGTQ 410
               K   E  + +   +L+P  +ED       +C  Q
Sbjct: 567 AKSHKSLKEVGQPSPVSILEPPTDEDSCCSGYFKCNLQ 604


>09_04_0075 -
           14340458-14340551,14340643-14340814,14340895-14341066,
           14341617-14341811,14341886-14342053,14342150-14342335,
           14342797-14342881,14342896-14343206,14344222-14344569
          Length = 576

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
 Frame = +3

Query: 345 EVLDPDFEE-------DLSLWMCLRCGTQLCGRTRNKHALNHFNTPHSDCHALAANSTTW 503
           +VLD DFE+       +L+++ CL CG    GR    HA  H        H +  N  T 
Sbjct: 116 QVLDFDFEKFCSISLSNLNVYACLVCGKYYQGRGLKSHAYTH---SLEAGHHVFINLQTE 172

Query: 504 EIYC 515
           + YC
Sbjct: 173 KAYC 176


>03_05_1139 -
           30689514-30689609,30689795-30689956,30691245-30691299,
           30691695-30691959,30692749-30692959,30693542-30693721,
           30693802-30693899,30694211-30694277,30694897-30694963,
           30695335-30695447,30695988-30696032,30696116-30696223,
           30696582-30696791,30697464-30697670,30697786-30697875,
           30698168-30698389
          Length = 731

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 165 KKRQSDPGENGDESTESCEENV 230
           KKRQSD G+  D  T   EE+V
Sbjct: 372 KKRQSDKGDGSDAETSMSEEDV 393


>09_04_0652 - 19227686-19227926,19229368-19232294
          Length = 1055

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
 Frame = +3

Query: 369 EDLSLWMCLRCGTQLCGRTRN-----KHALNHFNTPHSDCHALAANSTTWEI-YCYNCNN 530
           E   +W+CL CG   CG   +      HA  H      D H  AA      + +C +C  
Sbjct: 131 EKSDMWVCLDCGRHFCGGEVDVTKPYGHARRH---AKQDRHWWAARFDDPTVAFCLSCEK 187

Query: 531 EVT 539
           EV+
Sbjct: 188 EVS 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,239,652
Number of Sequences: 37544
Number of extensions: 273746
Number of successful extensions: 859
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)